Table 2.

Differential Gene Subset Expression in SEI Mutants at 1g Relative to CS at 1g

Term	Dir.	Description	Count	Fold	FDR
BP_GO:0006333	up	chromatin assembly or disassembly	23	5.8	<0.001
BP_GO:0006508	up	proteolysis	74	2	<0.001
BP_GO:0055114	up	oxidation-reduction process	62	2	<0.001
BP_GO:0045087	up	innate immune response	25	3.2	0.001
BP_GO:0006120	up	mitochondrial electron transport	13	4.6	0.017
BP_GO:0005975	up	carbohydrate metabolic process	23	2.9	0.019
MF_GO:0046982	up	protein heterodimerization activity	48	2.5	<0.001
MF_GO:0003954	up	NADH dehydrogenase activity	13	4.9	0.007
CC_GO:0005811	up	lipid particle	87	4	<0.001
CC_GO:0000788	up	nuclear nucleosome	41	7.9	<0.001
CC_GO:0005739	up	mitochondrion	66	1.8	0.0065
BP_GO:0043161	dwn	proteasome-mediated Ub-dependent catabolism	37	4.4	<0.001
BP_GO:0030497	dwn	fatty acid elongation	9	1.9	0.031
BP_GO:0006974	dwn	cellular response to DNA damage stimulus	19	2.2	0.048
MF_GO:0004298	dwn	threonine-type endopeptidase activity	12	1.4	<0.001
MF_GO:0004175	dwn	endopeptidase activity	12	1.4	0.042
CC_GO:0000502	dwn	proteosome complex	29	3.5	<0.001
CC_GO:0005634	dwn	nucleus	159	19	0.002
KEGG:dme03050	dwn	proteasome	28	3.3	<0.001

Table uses gene ontology (GO) terms. Dir., direction; up, upregulated; dwn, downregulated; BP, biological process; MF, molecular function; CC, cellular localization; KEGG, Kyoto Encyclopedia of Genes and Genomes pathway identification; FDR, false discovery rate.