Antibodies |
monoclonal antibody against Pericardin |
Developmental Studies Hybridoma Bank Iowa City, IA 52242. |
DSHB Cat # EC11 RRID:AB_528431 |
0S proteasome subunits a1,2,3,5,6 & 7 |
Enzo Life Sciences, Farmingdale, NY |
Cat # BML-PW8195 RRID:AB_10541045 |
Mouse anti-GFP |
Invitrogen, Carlsbad, CA, USA |
Cat # 33-2600 RRID:AB_2533111 |
anti-rabbit IgG conjugated with Alexa Fluor 488 |
Invitrogen, Carlsbad, CA, USA |
Cat # Cat # R37116 RRID:AB_2556544 |
anti-mouse IgG conjugated with Alexa Fluor 594 |
Invitrogen, Carlsbad, CA, USA |
R37121 RRID:AB_2556549 |
Phalloidin-Alexa Fluor 594 |
Molecular Probes, Eugene, OR |
Cat # A12381 RRID:AB_2315633 |
Chemicals, Peptides, and Recombinant Proteins |
Flynap |
Carolina Biological Supply Co, Burlington, NC |
#173010 |
Critical Commercial Assays |
miRNeasy Mini kit |
QIAGEN |
Cat. No. 217004 |
Illumina TruSeqâ„¢ RNA sample preparation kit |
Illumina, San Diego, CA) |
RS-122-2001 |
Deposited Data |
Drosophila melanogaster genome Ensembl.BDGP5 |
ensembl |
http://uswest.ensembl.org/Drosophila_melanogaster/Info/Index |
Kyoto Encyclopedia of Genes and Genomes |
https://www.kegg.jp/ |
RRID:SCR_012773 |
NASA Gene Labs |
This paper |
https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-347 |
Experimental Models: Organisms/Strains |
Canton S Wildtype Strain |
Bloomington Drosophila Stock Center |
BDSC Cat# 64349, RRID:BDSC_64349 |
Sei/hERG mutant |
Dr. Barry Ganetsky |
N/A |
PolyQ46-GFP line |
Dr. Girish Melkani |
N/A |
Software and Algorithms |
SOHA Semi Automated Optical Heartbeat Analysis |
http://www.sohasoftware.com |
N/A |
Axiovision software |
Zeiss |
RRID:SCR_002677 |
Weka Trainable Segmentation plugin in ImageJ |
https://www.cs.waikato.ac.nz/ml/weka/ |
RRID:SCR_001214 RRID:SCR_001935 |
FASTX-Toolkit |
Hannon Lab, Cold Spring Harbor, NY, USA) |
RRID:SCR_005534 |
BEDTools |
https://github.com/arq5x/bedtools2 |
RRID:SCR_006646 |
AltAnalyze |
http://www.altanalyze.org/ |
RRID:SCR_002951 |
Top Hat |
http://ccb.jhu.edu/software/tophat/index.shtml |
RRID:SCR_013035 |
Bow Tie |
http://bowtie-bio.sourceforge.net/index.shtml |
RRID:SCR_005476 |
Other |
9300 EM-CCD cameras |
Hamamatsu Corp. |
https://www.hamamatsu.com/eu/en/product/cameras/emccd-cameras/index.html |
Zeiss Apotome microscope |
Zeiss |
https://www.zeiss.com/microscopy/us/products/imaging-systems/apotome-for-biology.html |
Agilent 2200 Tapestation system |
Agilent, Santa Clara, CA |
https://www.agilent.com/en/product/automated-electrophoresis/tapestation-systems |
Illumina HiSeq 2000 |
Illumina, San Diego, CA) |
https://www.illumina.com |