Table 3.

Cooperative modules found in the promoter of the hub genes

Module	Elements	Domain	Strand	Matrix similarity	Distance to next element	Common to	p value
1	P$DOFF	DOF-C2C2 zinc finger domain	+	0.85(min. 0.96)	164–173 bp	19 matches in 15 seq. (88%), 18 non-overlapping	1.40355e−06
	P$GTBX	Trihelix domain	+	0.85(min. 0.86)
2	P$HMGF	AT-hook	+	0.85(min. 0.88)	178–187 bp	20 matches in 15 seq. (88%), 17 non-overlapping	1.61627e−06
	P$DOFF	DOF-C2C2 –zinc finger domain	+	0.85(min. 0.96)
3	P$AHBP	HD-ZIP	−	0.85(min. 0.86)	59–68 bp	22 matches in 15 seq. (88%), 19 non-overlapping	1.32362e−05
	P$SEF4	structure of DNA-binding domain not specified	−	0.85(min. 0.91)
4	P$AHBP	HD-ZIP	+	0.85(min. 0.86)	173–182 bp	34 matches in 16 seq. (94%), 29 non-overlapping	2.11074e−05
	P$CAAT	heterotrimeric transcription factor	−	0.85(min. 0.86)
5	P$AHBP	HD-ZIP	+	0.85(min. 0.86)	154–163 bp	28 matches in 15 seq. (88%), 24 non-overlapping	2.29321e−05
	P$GTBX	Trihelix domain	+	0.85(min. 0.85)
6	P$HMGF	AT-hook	−	0.85 (min. 0.90	77–86 bp	22 matches in 15 seq. (88%), 22 non-overlapping	2.37645e−05
	P$MYBL	MYB domain	−	0.85(min. 0.85)