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. 2021 Jan 6;19:2. doi: 10.1186/s43141-020-00104-z

Table 3.

Cooperative modules found in the promoter of the hub genes

Module Elements Domain Strand Matrix similarity Distance to next element Common to p value
1 P$DOFF DOF-C2C2 zinc finger domain + 0.85(min. 0.96) 164–173 bp 19 matches in 15 seq. (88%), 18 non-overlapping 1.40355e−06
P$GTBX Trihelix domain + 0.85(min. 0.86)
2 P$HMGF AT-hook + 0.85(min. 0.88) 178–187 bp 20 matches in 15 seq. (88%), 17 non-overlapping 1.61627e−06
P$DOFF DOF-C2C2 –zinc finger domain + 0.85(min. 0.96)
3 P$AHBP HD-ZIP 0.85(min. 0.86) 59–68 bp 22 matches in 15 seq. (88%), 19 non-overlapping 1.32362e−05
P$SEF4 structure of DNA-binding domain not specified 0.85(min. 0.91)
4 P$AHBP HD-ZIP + 0.85(min. 0.86) 173–182 bp 34 matches in 16 seq. (94%), 29 non-overlapping 2.11074e−05
P$CAAT heterotrimeric transcription factor 0.85(min. 0.86)
5 P$AHBP HD-ZIP + 0.85(min. 0.86) 154–163 bp 28 matches in 15 seq. (88%), 24 non-overlapping 2.29321e−05
P$GTBX Trihelix domain + 0.85(min. 0.85)
6 P$HMGF AT-hook 0.85 (min. 0.90 77–86 bp 22 matches in 15 seq. (88%), 22 non-overlapping 2.37645e−05
P$MYBL MYB domain 0.85(min. 0.85)