Table 2.
Databases of circRNAs
| Database | Websites | The date of launching | Function |
|---|---|---|---|
| circRNABase | http://starbase.sysu.edu.cn/starbase2/mirCircRNA.php | 2013 | Constructing interaction networks of miRNA and circRNA and circRNA and RBPs |
| Circ2Traits | http://gyanxet-beta.com/circdb/ | 2013 | The first database to collect circRNAs potentially associated with human disease or traits |
| circBase | http://www.circbase.org/ | 2014 | Information such as genome location, cell line or tissue source and references can be provided and downloaded for a specific circRNA |
| CIRCpedia | http://www.picb.ac.cn/rnomics/circpedia/ | 2016 | Providing annotations of alternative splicing and back splicing events for circRNAs from different cell lines or tissues |
| deepBase v2.0 | http://deepbase.sysu.edu.cn/ | 2016 | A platform for analyzing and predicting the evolution, expression patterns and functions of ncRNA in 19 different species |
| CircInteractome | https://circinteractome.nia.nih.gov/ | 2016 | Predicting potential binding sites for RBPs and circRNA, miRNAs and circRNA, designing primers and siRNA for circRNAs |
| CircNet | http://circnet.mbc.nctu.edu.tw/ | 2016 | The first public information platform that provides tissue-specific circRNA expression and circRNA-miRNA-mRNA regulatory networks |
| CircRNADb | http://202.195.183.4:8000/circrnadb/circRNADb.php | 2016 | The first circRNA database with the ability to encode proteins, providing information on the translational potential of circRNA and its related proteins |
| TSCD | http://gb.whu.edu.cn/TSCD/ | 2017 | Searching for tissue-specific circRNA information in humans and mouse and predicting bound miRNAs |
| exoRBase | http://www.exorbase.org/ | 2017 | Containing mRNA, lncRNA and circRNA, from serum exosomal RNA-seq sequencing samples |
| CSCD | http://gb.whu.edu.cn/CSCD/ | 2018 | Provides many tumor-specific circRNAs, predicting MRE, RBP binding sites, ORF, and analyzing alternative splicing of related genes |
| circlncRNAnet | http://app.cgu.edu.tw/circlnc/ | 2018 | An online analysis database that integrates the functional network of lncRNA and circRNA, supporting online visual analysis |
| circRNA disease | http://cgga.org.cn:9091/circRNADisease/ | 2018 | Collecting human disease-related circRNAs and searching by circRNA name or disease name is supported |
| CircR2Disease | http://bioinfo.snnu.edu.cn/CircR2Disease/ | 2018 | Revealing the relationship between circRNA and disease, and building an interaction network of circRNA and diseases |