Table 2.
Hierarchical TAD-like domain counts for replicates 1 and 2
| TAD level | Replicate 1 100% read count |
Replicate 1 50% read count |
Replicate 2 100% read count |
Replicate 2 50% read count |
|---|---|---|---|---|
| 0 | 7131 | 7989 | 7257 | 8028 |
| 1 | 6621 | 4982 | 6997 | 6231 |
| 2 | 3206 | 2084 | 3384 | 2717 |
| 3 | 835 | 428 | 911 | 603 |
| 4 | 157 | 57 | 165 | 83 |
| 5 | 24 | 10 | 25 | 10 |
| 6 | 4 | 0 | 0 | 0 |
Hierarchical domains (level 0 to 6) were detected in replicates 1 and 2 from Hi-C contact maps generated using 100 and 50% total sequencing read counts. Domains (level 0) were further divided into nested “sub-domains” (levels 1 to 6).