Table 5.

Replicate 1 loop overlap with hierarchical TAD-like domains

	Embedded loops	1 co-located anchor	2 co-located anchors
Level 0	4272	1214	85
Level 1	2484	1024	103
Level 2	852	366	67
Level 3	185	76	7
Level 4	18	13	0
Level 5	2	3	0
Level 6	2	1	0

Out of a total of 16,863 loops (excluding Chr0 loops), 10,774 overlap with replicate 1 domains, including 7815 fully embedded within domains (“Embedded loops”). Hierarchical TAD-like domains (levels 0 to 6) are shown on the left column. “Embedded loops”: Hi-C loops are fully included within a domain; “1 co-located anchor”: one Hi-C loop anchor overlaps with one of the two domain boundaries only, while the other anchor is located inside the domain; “2 co-located anchors”: both Hi-C loop anchors overlap with boundaries from the same domain. Loops overlapping with multiple Level 0 domains or not overlapping with any domains are not shown.