Table 1.
Primers name, gene target, sequence and method for the P. falciparum resistance genotyping
Target | Primer name/reference | Method | Seq. 5′→3′ |
---|---|---|---|
MDR | MDR1-pfmdr1-1FK76T21 | RT-PCR MDR A and sequencing | GTTGAACAAAAAGAGTACCGCTG |
MDR2-pfmdr1-1RK76T21 | TCGTACCAATTCCTGAACTCAC | ||
MDR3-pfmdr1-2FK76T21 | Sequencing | TTTCCGTTTAAATGTTTACCTGC | |
MDR4-pfmdr1-2RK76T21 | CCATCTTGATAAAAAACACTTCTT | ||
MDR1-1246-pfmdr1-1FD1246Y21 | RT-PCR MDR B and sequencing | ATGACAAATTTTCAAGATTA | |
MDR2-1246-pfmdr1-1FD1246Y21 | ACTAACACGTTTAACATCTT | ||
MDR3-1246-pfmdr1-1FD1246Y21 | Sequencing | AATGTAAATGAATTTTCAAACC | |
MDR4-1246-pfmdr1-1FD1246Y21 | CATCTTCTCTTCCAAATTTGATA | ||
Cyt B | CytB1-1F22 | RT-PCR/sequencing | CTCTATTAATTTAGTTAAAGCACAC |
CytB2-1R22 | ACAGAATAATCTCTAGCACC | ||
CytB3- 2F22 | Sequencing | AGCAGTAATTTGGATATGTGGAGG | |
CytB4-2R22 | ATTTTTAATGCTGTATCATACCCT | ||
K13 | Pfal-k13-2-2PCR20 | RT-PCR/sequencing | GCCAAGCTGCCATTCATTTG |
Pfal-k13-3-2PCR20 | GCCTTGTTGAAAGAAGCAGA |