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. 2021 Jan 6;21:19. doi: 10.1186/s12870-020-02814-5

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 4 — DNA methylation variance of green tip at different diel periods. a Density of differential methylation regions of CG, CHG, and CHH contexts across diel time course of green tip leaf tissue. ‘n’ denotes the number of DMRs. The vertical dotted lines mean the defined threshold of different DNA methylation changes (e.g. 0.4 for CG, 0.2 for CHG, and 0.1 for CHH methylation). b Heat map of DNA methylation levels of all DMRs (CG+CHG+CHH) of green tip leaf tissue. c Sankey plot of DMR dynamics across different periods of green tip of CG, CHG, and CHH contexts. d The genomic distribution of DMRs of green tip across different diel time course