Table 4. Taxonomies with applied CCN.
Table showing the set of taxonomies included in Supplementary file 1. All taxonomies include the annotated nomenclature table. Asterisk (*) and carrot (^) indicate that the updated dendrogram and cell to cell set mapping files are also included for that taxonomy, respectively. CCN202002270 is the reference taxonomy presented in Figure 3B.
| Taxonomy id | Description | Reference |
|---|---|---|
| CCN201810310^* | Mouse VISp + ALM (from the Tasic et al., 2018) | Tasic et al., 2018 |
| CCN201908210^* | Human MTG (from the Tasic et al., 2018) | Hodge et al., 2019 |
| CCN201908211^* | Joint mouse/human analysis (slight modification from Hodge et al., 2019) | Hodge et al., 2019 |
| CCN201912130 | Human M1 taxonomy using 10× data | Bakken et al., 2020a |
| CCN201912131 | Human M1 taxonomy using Smart-seq and 10x data | Bakken et al., 2020a |
| CCN201912132 | Marmoset M1 taxonomy using 10× data | Bakken et al., 2020a |
| CCN202002013* | Mouse MOp BICCN taxonomy using multiple RNAseq datasets | Yao et al., 2020a |
| CCN202002270 | Cross species (integrated) transcriptomics taxonomy | Bakken et al., 2020a |
| CCN202002271 | Macaque transcriptomics taxonomy, layer 5/6 only | Bakken et al., 2020a |
| CCN202002272 | Human DNA methylation taxonomy | Bakken et al., 2020a |
| CCN202002273 | Human ATAC-seq taxonomy | Bakken et al., 2020a |
| CCN202002274 | Marmoset DNA methylation taxonomy | Bakken et al., 2020a |
| CCN202002275 | Marmoset ATAC-seq taxonomy | Bakken et al., 2020a |
| CCN202002276 | Mouse DNA methylation taxonomy | Yao et al., 2020a |
| CCN202002277 | Mouse ATAC-seq taxonomy | Yao et al., 2020a |
| CCN202005150^ | Mouse inhibitory neurons in VISp defined using electrophysiology, morphology, and transcriptomics | Gouwens et al., 2020 |
| CCN201906170 | Mouse neurons in VISp defined using electrophysiology and morphology | Gouwens et al., 2019 |
| CCN201805250 | Turtle pallium transcriptomics taxonomy | Tosches et al., 2018 |