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. 2020 Dec 22;22(1):10. doi: 10.3390/ijms22010010

Table 2.

Characteristic of primer and conditions of the MS-HRM protocol.

Oxidative and Nitrosative Stresses
Gene Starter Sequence (5′->3′) Product Size [bp] The Condition of the Reaction
The Initial Activation of the Polymerase Denaturation Annealing Elongation The HRM Analysis
Temperature [°C] Time [min] Temperature [°C] Time [s] Temperature [°C] Time [s] Temperature [°C] Time [s]
Cat F: TTTGAGATTATTGTGTTTGAAA
R: TACCTACACCCAAAAAAAAATA
148 95 12 95 15 59 20 72 20 Denaturation at 95 °C for 15 s, reannealing at 60 °C for 1 min and melting from 60 to 95 °C at a ramp rate of 0.2 °C
Gpx1 F: GTTGTTTTAGGTTTTGTTGTTG
R: AAAACTAAAATCCTCCAACTCT
102 65
Gpx4 (promotor 2) F: AGGTTGGAGGTTTAGAGGTTTA
R: TCCCCTAAATACAAAAATCTCT
118 59
Gpx4 (promotor 3) F: AGGTTGGAGGTTTAGAGGTTTA
R: AAAACATAACAAAATCATCTCCC
147 65
Nos1 (promotor 5) F: GGGTTTTTAATTTTTTTATTGTG
R: CAACCCTCATTAAAAAAACC
124 59
Nos1 (promotor 7) F: GTTTGAGATTGGAATTTTTTGG
R: CCAAAACATCCAAAAATACACA
124 59
Tryptophan catabolites pathway
Gene Starter sequence (5′->3′) Product size [bp] The condition of the reaction
The initial activation of the polymerase Denaturation Annealing Elongation The HRM analysis
Temperature [°C] Time [min] Temperature [°C] Time [s] Temperature [°C] Time [s] Temperature [°C] Time [s]
Tph1 F: GGGAGTTTTGTTTTGGTTTTTA
R: TCCTCAACCACAAAAAATCTAA
132 95 12 95 15 55 20 72 20 Denaturation at 95 °C for 15 s, reannealing at 60 °C for 1 min and melting from 60 to 95 °C at a ramp rate of 0.2 °C
Ido1 F: TTTGAGTTTTAGTGATTTTGGG
R: TTAATATCTAATCCCAATCTCTAAAAC
100 59
Tdo2 (promoter 1) F: GATGATTTAGGTGGTTTGAGGT
R: CAAAAAAAACAAAATTCATCCA
123 59
Tdo2 (promoter 2) F: ATGATTTAGGTGGTTTGAGGTT
R: ACCCAATCTACCTAACTAACAAC
187 61.4
Kmo F: TTGGTTTAGGGAAGGAAATR: ATAAAAAACTAAACCCAAAACAC 150 55.7