Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Gene (Danio rerio) |
slc24a5 | Ensembl | ENSDARG00000024771 | |
| Gene (D. rerio) |
tyr | Ensembl | ENSDARG00000039077 | |
| Gene (D. rerio) |
mab21l2 | Ensembl | ENSDARG00000015266 | |
| Gene (D. rerio) |
tbx16 | Ensembl | ENSDARG00000007329 | |
| Gene (D. rerio) |
tbx5a | Ensembl | ENSDARG00000024894 | |
| Gene (D. rerio) |
ta (tbxta) | Ensembl | ENSDARG00000101576 | |
| Gene (D. rerio) |
slc45a2 | Ensembl | ENSDARG00000002593 | |
| Gene (D. rerio) |
mitfa | Ensembl | ENSDARG00000003732 | |
| Gene (D. rerio) |
mpv17 | Ensembl | ENSDARG00000032431 | |
| Gene (D. rerio) |
trpa1b | Ensembl | ENSDARG00000031875 | |
| Gene (D. rerio) |
csnk1db | Ensembl | ENSDARG00000006125 | |
| Gene (D. rerio) |
scn1lab | Ensembl | ENSDARG00000062744 | |
| Genetic reagent (D. rerio) |
Tg(elavl3:GCaMP6s)a13203 | PMID:28892088 | ZFIN ID: ZDB-ALT-180502–2 | Kim et al., 2017 |
| Genetic reagent (D. rerio) |
mitfaw2 (nacre) | PMID:10433906 | ZFIN ID: ZDB-ALT-990423–22 | Lister et al., 1999 |
| Genetic reagent (D. rerio) |
Tg(per3:luc)g1 | PMID:15685291 | ZFIN ID: ZDB-ALT-050225–2 | Kaneko and Cahill, 2005 |
| Genetic reagent (D. rerio) |
Tg(elavl3:EGFP)knu3 | PMID:11071755 | ZFIN ID: ZDB-ALT-060301–2 | Park et al., 2000 |
| Genetic reagent (D. rerio) |
mab21l2u517 | PMID:32930361 | mutant line | Wycliffe et al., 2020 |
| Genetic reagent (D. rerio) |
scn1labΔ44 | This study | mutant line | Available from Hoffman lab |
| Sequence-based reagent | Alt-R CRISPR-Cas9 crRNAs | IDT | see Supplementary file 1 | |
| Sequence-based reagent | Alt-R CRISPR-Cas9 Negative Control crRNA #1 | IDT | Catalog #: 1072544 | see Supplementary file 1 |
| Sequence-based reagent | Alt-R CRISPR-Cas9 Negative Control crRNA #2 | IDT | Catalog #: 1072545 | see Supplementary file 1 |
| Sequence-based reagent | Alt-R CRISPR-Cas9 Negative Control crRNA #3 | IDT | Catalog #: 1072546 | see Supplementary file 1 |
| Sequence-based reagent | Alt-R CRISPR-Cas9 tracrRNA | IDT | Catalog #: 1072532 | |
| Sequence-based reagent | PCR primers | Thermo Fisher | see Supplementary file 1 | |
| Peptide, recombinant protein | Alt-R S.p. Cas9 Nuclease V3 | IDT | Catalog #: 1081058 | |
| Chemical compound, drug | Mustard oil (allyl isothiocyanate) | Sigma-Aldrich | Catalog #: W203408 | |
| Chemical compound, drug | Beetle luciferin | Promega | Catalog #: E1601 | |
| Chemical compound, drug | PF-670462 | Sigma-Aldrich | Catalog #: SML0795 | |
| Software, algorithm | ampliCan | PMID:30850374 | bioconductor.org/packages/release/bioc/html/amplican.html | |
| Software, algorithm | BioDare2 | PMID:24809473 | biodare2.ed.ac.uk | |
| Software, algorithm | ZebraLab | ViewPoint Behavior Technology | viewpoint.fr/en/p/software/zebralab-zebrafish-behavior-screening | |
| Software, algorithm | MATLAB scripts for behaviour analysis: Vp_Extract.m and Vp_Analyse.m | PMID:32241874 | Scripts included in the GitHub and Zenodo repositories (see Data/resource sharing) | |
| Software, algorithm | R packages | CRAN | see Supplementary file 2 | |
| Software algorithm | Command line packages | Conda | see Supplementary file 2 | |
| Software algorithm | MATLAB toolboxes | MathWorks | see Supplementary file 2 | |
| Software, algorithm | R v3.6.2 | CRAN | r-project.org | |
| Software, algorithm | MATLAB R2018a | MathWorks | mathworks.com/products/matlab.html |