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. 2020 Dec 21;11:582355. doi: 10.3389/fgene.2020.582355

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Copyright © 2020 Gu, Liang, Liu and Li.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Genomic regions with strong selective sweep signals in NYs. (A) Distribution of log2 (θπ ratio [θπ, Others / θπ, NYs]) (top 5% outliers, log2 [θπ ratio] > 0.46) and F_ST values (top 5% outliers, F_ST > 0.13), which are calculated in 40 kb windows sliding in 20 kb steps. The selected regions for NYs were indicated by red dots. (B) The Manhattan plot shown candidate genes positively selected in XP-CLR method between NYs and Others. The dotted line indicates the top 1% threshold. The data points above the straight line (corresponding to the top 1% of empirical values) are genomic regions under selection in NYs. (C) A total of 171 candidate genes in NYs were identified by combining three methods (including log2 [θπ ratio], F_ST and XP-CLR) simultaneously and are shown using Venn diagram components.