TABLE 3.
Candidate region and position of BSR.
| Chromosome | Candidate region |
SNP/InDel |
Type | Annotated gene | ||||
| Position | Reference | Alteration | index_HFN | index_LFN | ||||
| chr1B | 98600001_100160000 | 1E + 08 | T | C | 0.14 | 1 | Intergenic | Peroxidase |
| 472530001_474448000 | 4.74E + 08 | G | A | 1 | 0.14 | Intergenic | FBD-associated F-box protein, NBS-LRR-like resistance protein | |
| 4.74E + 08 | C | T | 1 | 0.2 | Synonymous | NBS-LRR-like resistance protein | ||
| chr2A | 557528001_559122000 | 5.59E + 08 | C | A | 1 | 0.17 | Intergenic | C2 and GRAM domain-containing protein, Ribonuclease H2 subunit B |
| chr2B | 674064001_674066000 | 6.74E + 08 | G | A | 1 | 0 | Intergenic | C2 and GRAM domain-containing protein, Ribonuclease H2 subunit B |
| chr3A | 336877001_337499000 | 3.37E + 08 | T | C | 1 | 0.19 | Downstream | Translation initiation factor IF-2 |
| 647028001_650058000 | 6.48E + 08 | A | G | 1 | 0.06 | Downstream | Legume-specific protein | |
| 6.5E + 08 | G | T | 1 | 0 | Synonymous | plasminogen activator inhibitor | ||
| 656618001_660197000 | 6.57E + 08 | C | T | 0.19 | 1 | Downstream | BTB/POZ and TAZ domain protein | |
| 6.57E + 08 | G | A | 0.1 | 1 | Downstream | |||
| 668527001_669767000 | 6.7E + 08 | A | G | 1 | 0 | Downstream | RING/U-box superfamily protein | |
| 676830001_677830000 | 6.78E + 08 | AT | A | 0.07 | 1 | Intergenic | MADS-box transcription factor, Chaperone protein dnaJ | |
| 681935001_684306000 | 6.83E + 08 | G | A | 0.08 | 1 | Non-synonymous | Glycosyltransferase family exostosin protein | |
| 6.83E + 08 | G | C | 0.09 | 1 | Non-synonymous | |||
| chr3B | 366553001_367488000 | 3.67E + 08 | A | AT | 0.14 | 1 | Intergenic | Protein transport protein Sec61 beta subunit, Protein CHUP1 |
| 771397001_772397000 | 7.72E + 08 | GGCC | G | 1 | 0.14 | Non-frameshift deletion | Voltage-dependent L-type calcium channel subunit | |
| chr3D | 476905001_478135000 | 4.78E + 08 | A | G | 1 | 0.11 | Synonymous | Transcription initiation factor TFIID subunit 12 |
| 504737001_509082000 | 5.06E + 08 | C | T | 1 | 0.08 | Intronic | DUF1685 family protein | |
| 5.07E + 08 | A | G | 1 | 0.07 | Upstream | Beta-glucosidase | ||
| 504999001_505999000 | 5.06E + 08 | CAG | C | 1 | 0.14 | Intronic | DUF1685 family protein | |
| 516692001_517008000 | 5.17E + 08 | A | G | 1 | 0.11 | Downstream | 2-Oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | |
| 520654001_520863000 | 5.21E + 08 | A | G | 1 | 0.07 | Non-synonymous | GPI transamidase component PIG-S | |
| 525977001_529347000 | 5.28E + 08 | T | C | 1 | 0 | Synonymous | Subtilisin-like protease | |
| 544416001_545650000 | 5.45E + 08 | G | C | 1 | 0 | Iintronic | NAC domain protein | |
| 550392001_552252000 | 5.51E + 08 | A | T | 1 | 0.07 | Non-synonymous | Alcohol dehydrogenase, putative | |
| 5.52E + 08 | G | A | 1 | 0 | Downstream | Auxin response factor | ||
| 565077001_566487000 | 5.66E + 08 | C | T | 1 | 0 | Non-synonymous | Eukaryotic aspartyl protease family protein | |
| 577928001_578928000 | 5.79E + 08 | G | C | 1 | 0.11 | Synonymous | Amino acid permease | |
| 5.79E + 08 | C | T | 1 | 0 | Synonymous | Amino acid permease | ||
| chr4A | 713726001_714049000 | 7.14E + 08 | A | T | 0 | 1 | Intergenic | Calcium-dependent lipid-binding domain-containing protein, Receptor-like protein kinase |
| chr5B | 549848001_551806000 | 5.52E + 08 | C | T | 1 | 0.12 | Downstream | 60S ribosomal protein L5 |
| chr7A | 693565001_694565000 | 6.95E + 08 | T | C | 1 | 0.14 | Intergenic | DNA-3-methyladenine glycosylase, Cytochrome b561 and DOMON domain-containing protein |
| 6.95E + 08 | A | C | 1 | 0.19 | Intergenic | |||
| 693565001_694565000 | 6.95E + 08 | T | C | 1 | 0.12 | Intergenic | ||
| 6.95E + 08 | A | G | 1 | 0.15 | Intergenic | |||
| 6.95E + 08 | T | A | 1 | 0.19 | Intergenic | |||
| chr7B | 576432001_576676000 | 5.77E + 08 | T | C | 1 | 0 | Intergenic | 60S ribosomal protein L28, Retrovirus-related pol polyprotein from transposon tnt 1-94 |