TABLE 3.

Identified MLST for the 10 strains of increment 1.

Pipeline, tool		1	2	3	4	5	6	7	8	9	10
C	Seqsphere+ 4.1.9	ST5	U	ST45	ST15	ST152	ST152	ST15	ST15	U	U
D	CLC Genomics 10.1.1	ST5	ST121	ST45	ST15	ST152	ST152	ST15	ST15	U	U
G	ARIBA 2.10.2	ST5	ST121	ST45	ST15	ST152	ST152	ST15	ST15	U	U
R	mlst server 1.8	ST5	ST121	ST45	U	U	ST152	ST15	U	U	U
S	mlst server 2.9	ST5	U	ST45	ST15	ST152	ST152	ST15	ST15	U	U
B	Bionumerics 7.6.3894	ST5	U	ST45	ST15	ST152	ST152	ST15	ST15	U	U
T	Seqsphere+ 4.1.9	ST5	U	ST45	ST15	ST152	ST152	ST15	ST15	U	U

Missing pipelines did not submit any MLST. U, unknown; note: samples 9, 10 correspond to ST5685, unknown at the time of the study.