| GFP | green fluorescent protein |
| FRET | Förster resonance energy transfer |
| RFP | red fluorescent protein |
| GECO | genetically encoded calcium indicator for optical imaging |
| GECI | genetically encoded calcium indicator |
| ESPT | excited-state proton transfer |
| HOMO | highest occupied molecular orbital |
| LUMO | lowest unoccupied molecular orbital |
| fs-TA | femtosecond transient absorption |
| ESA | excited-state absorption |
| SE | stimulated emission |
| HGSA | hot ground state absorption |
| DADS | decay-associated difference spectra |
| EADS | evolution-associated difference spectra |
| p-HBDI | 4′-hydroxybenzylidene-1,2-dimethyl-imidazolinone |
| DFT | density functional theory |
| TD-DFT | time-dependent DFT |
| MD | molecular dynamics |