| BION | bound ion prediction method |
| Zeta | Zeta potential |
| PDB | Protein data bank |
| DelPhi | Poisson–Boltzmann solver |
| VMD | visual molecular dynamics |
| PBE | Poisson–Boltzmann equation |
| vdW | van der Waals |
| PQR | position, charge, radius format |
| NMR | nucleic magnetic resonance |
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