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Workflow and analysis design. (a) Summary of the analysis design followed in this work, (b) PCA plot and HC analysis as an example of exploratory analysis (to explore possible batch effects and to assure expected data behavior) performed at the pre-processing stage to assess for the integrity of the data, (c) example of UpSet plot as an intersection analysis for functional enrichment analysis results, and (d) examples of forest and funnel plots to assess meta-analysis results.
