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. 2020 Dec 22:bbaa359. doi: 10.1093/bib/bbaa359

Table 2.

Inspection of metadata fields in different search portals for SARS-CoV2 sequences. Inline graphic is used when the attribute is present in the search filters (S), in the table of results (T), in single entries (E).

Attribute description NCBI Virus COVID-19DP ViPR EpiCoVTM CoV-GLUE 2019nCoVR VirusDIP CARD CoV-Seq ViruSurf
S T S T S T S T E S T E S T E S T S T S T
Biology: virus Accession Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Related ID Inline graphic Inline graphic Inline graphic Inline graphic
Strain Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Virus Taxonomy ID Inline graphic Inline graphic Inline graphic
Virus Species Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Virus Genus Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Virus Subfamily Inline graphic Inline graphic
Virus Family Inline graphic Inline graphic Inline graphic Inline graphic
Lineage Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
CoV-GLUE Lineage Inline graphic Inline graphic
Pangolin Lineage Inline graphic Inline graphic
Total LWR Inline graphic
MoleculeType Inline graphic Inline graphic Inline graphic
SingleStranded Inline graphic
PositiveStranded Inline graphic
Passage detail Inline graphic Inline graphic
Biology: sample Collection date Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Location Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Origin lab Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Host Taxonomy ID Inline graphic Inline graphic
Host organism Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Host gender Inline graphic Inline graphic Inline graphic Inline graphic
Host age Inline graphic Inline graphic Inline graphic Inline graphic
Host status Inline graphic Inline graphic
Environmental source Inline graphic
Specimen source Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
BiosampleId Inline graphic
Technology Sequencing Technology Inline graphic Inline graphic Inline graphic Inline graphic
Assembly method Inline graphic Inline graphic Inline graphic Inline graphic
Coverage Inline graphic Inline graphic Inline graphic Inline graphic
Quality Assessment Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Sequence Quality Inline graphic Inline graphic
SRA Accession Inline graphic
Sequence Complete Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Length Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
IsReference Inline graphic Inline graphic
GC bases% Inline graphic Inline graphic
Unknown bases % Inline graphic Inline graphic Inline graphic
Degegerate bases % Inline graphic
Organization Authors Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Publications Inline graphic Inline graphic
Submission date Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Submission lab Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Submitter Inline graphic Inline graphic
Release date Inline graphic Inline graphic Inline graphic Inline graphic
Data source Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic Inline graphic
Last Update Time Inline graphic
Bioproject ID Inline graphic Inline graphic