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. 2020 Jul 20;39(1):105–114. doi: 10.1038/s41587-020-0603-3

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — a, Maximum-likelihood phylogenetic tree of the 4,616 bacterial species detected in the human gut. Clades are colored by the cultured status of species, with outer circles depicting the GTDB phylum annotation. Bar graphs in the outermost layer indicate the number of genomes from each species. The order Comantemales ord. nov. is highlighted with dark green branches. b, Proportion of species within the 25 prokaryotic phyla detected according to cultured status. Numbers in parentheses represent the total number of species in the corresponding phylum. c, Phylogenetic tree of species belonging to the order Comantemales ord. nov. (phylum Firmicutes A), the largest phylogenetic group exclusively represented by uncultured species. The geographic distribution of each species and the number of genomes recovered are represented below the tree. The species previously classified as Candidatus ‘Borkfalki ceftriaxensis’ is indicated with an asterisk.