Table 2.
Statistics of differentially expressed genes. The DEGs were defined based on false discovery rate (FDR) < 0.05 and log2(fold change) ≥ 1
| Comparison | No. of upregulated DEGs | No. of downregulated DEGs | No. of all DEGs |
|---|---|---|---|
| W15d_vs_W9d | 1109 | 1058 | 2167 |
| W20d_vs_W9d | 1455 | 1484 | 2939 |
| W25d_vs_W9d | 2326 | 2937 | 5263 |
| M15d_vs_M9d | 603 | 636 | 1239 |
| M20d_vs_M9d | 1309 | 1828 | 3137 |
| M25d_vs_M9d | 2452 | 3253 | 5705 |
Regarding the comparison of W15d_vs_W9d, the data mean that a total of 2167 DEGs (1109 genes upregulated and 1058 genes downregulated) were identified in the 15 DPA samples of WT compared with the 9 DPA samples of WT. This nomenclature is applied to all comparisons in this study