Table 1. A subset of 10 HPAStainR results of PanglaoDB cell type marker queries.
Both the overall top HPAStainR result and a tissue-specific result is given. The “Select Tissues” results are from a search performed for the PanglaoDB cell type only within the matched tissue type (ALL CAPITALIZED) in HPA.
| PanglaoDB Cell
Type |
Confidence
Score |
Top HPAStainR Result | Top
Result Stained Score |
Top
Adjusted P-value |
Select Tissue Top
Result |
Select
Tissue Top Stained Score |
Select
Tissue Adjusted P-value |
|---|---|---|---|---|---|---|---|
| KIDNEY proximal
tubule cells |
66.75 | KIDNEY - cells in tubules | 66.75 | 1.59E-18 | KIDNEY - cells in tubules | 66.75 | 1.59E-18 |
| HEART MUSCLE
cardiomyocytes |
61 | HEART MUSCLE -
myocytes |
61 | 1.29E-33 | HEART MUSCLE -
myocytes |
61 | 1.29E-33 |
| IMMUNE SYSTEM
neutrophils |
60 | BONE MARROW -
hematopoietic cells |
60 | 9.99E-13 | BONE MARROW -
hematopoietic cells |
60 | 9.99E-13 |
| OLFACTORY SYSTEM
olfactory epithelial cells |
51.25 | BRONCHUS -
respiratory epithelial cells |
51.25 | 2.17E-05 | NASOPHARYNX -
respiratory epithelial cells |
39.75 | 0.00076 |
| CONNECTIVE
TISSUE adipocytes |
33.75 | KIDNEY - cells in tubules | 33.75 | 1 | ADIPOSE TISSUE -
adipocytes |
24.25 | 0.02353 |
| CONNECTIVE
TISSUE chondrocytes |
27.25 | TONSIL - squamous
epithelial cells |
27.25 | 1 | SOFT TISSUE -
chondrocytes |
20.75 | 0.00025 |
| REPRODUCTIVE
granulosa cells |
13.6 | PLACENTA -
trophoblastic cells |
42.5 | 0.00174 | OVARY - follicle cells | 25 | 1 |
| HEART MUSCLE
purkinje fiber cells |
5.775 | CAUDATE - neuronal
cells |
57.75 | 1 | HEART MUSCLE -
myocytes |
0 | 1 |
| BRAIN cholinergic
neurons |
5.25 | DUODENUM - glandular
cells |
37.5 | 1 | CEREBRAL CORTEX
- neuronal cells |
31.25 | 1 |
| EMBRYO
trophoblast progenitor cells |
3 | PLACENTA -
trophoblastic cells |
50 | 1 | tissue not found | NA | NA |