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. 2021 Jan 12;22:23. doi: 10.1186/s13059-020-02217-7

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Genome-wide analysis of the independent selection in domestication traits between SL and NL. a, b Selective signals in domestication of SL (a, green) and in NL (b, blue) on the 8 chromosomes. Red arrows indicate highly selective genomic regions overlapped with GWAS signals. PH, plant height; GW, 1000-grain weight; GP, whole growth period; SCD, seed circular degree; SWI, seed wing; PC, pericarp color; GYPP, grain yield per plant. c, d Local Manhattan plots of GWAS signals overlapping with selection sweeps for GW in SL (c) and NL (d) populations. e, f Local Manhattan plots of GWAS signals overlapping with selection sweeps for PH on chromosome 5 (e) and 6 (f) in SL