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Summary of execution times by (sub)module
| MODULE | STEP | DTS1 (3980 genomes) | DTS2 (225 genomes) |
|---|---|---|---|
| prepare | Downloading | 1 h (5805 genomes) | 3 min (266 genomes) |
| Quality control | <4 min | ∼15 s | |
| Filter | 20 min | ∼1 min | |
| annotate | With Prokka | 5 days | 10 h |
| With Prodigal | 6 h | 30 min | |
| pangenome | 30 min | 1 min | |
| corepers (1 CPU) | 1 min | 5 s | |
| align | Strict persistent | 3 h | 10 min |
| Mixed-persistent | 7 h | 11 min | |
| tree (IQ-TREE2) (28 CPUs) | Strict-persistent | 7 h (40 GB RAM) | 3 min 10 |
| Mixed-persistent | 24 h (90 GB RAM) | 3 min 30 | |
