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. 2021 Jan 12;11:1623. doi: 10.1038/s41598-020-79005-7

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Manhattan plots and Q–Q plots displaying the GWAS results for chicken Campylobacter colonisation resistance using the 50K (A) and the imputed 600K (B) HD arrays. (i) Genomic location is plotted against – log₁₀(P) in the Manhattan plot. Genome-wide (P < 0.05) and suggestive genome-wide thresholds are shown as red and blue lines, respectively. (ii) Q–Q plot of observed P values against the expected P values for Campylobacter caecal load of (log-transformed CFU of Campylobacter per gram of caeca content).