Table 1.
Chr:position (hg38) | SNV/indel | Coded allele/Other | Minor allele | Beta (SE) (Coded allele) |
p | Gene | Function | |
---|---|---|---|---|---|---|---|---|
Freq Count | ||||||||
1:56,690,933 | rs180996919 | C/G | 0.0004 | 19 | −14.56 (2.2) | 6.1 × 10−11 | PRKAA2 | Intronic |
2:171,363,037 | rs116951054 | A/C | 0.0009 | 41 | 9.10 (1.55) | 4.5 × 10−9 | METTL8 | Intronic |
15:45,355,229* | rs2461702 | G/A | 0.49 | 23,170 | −0.63 (0.10) | 1.2 × 10−10 | GATM | Intergenic |
17:39,466,919* | rs71147340 | C/CT | 0.34 | 16,247 | −0.57 (0.10) | 3.3 × 10−9 | CDK12 | Intronic |
19:3,799,817 | rs539182790 | G/GGT | 0.0005 | 26 | −9.69 (1.64) | 3.4 × 10−9 | MATK | Intronic |
SNV, single nucleotide variant. Significance threshold 5.0 × 10−9; betas are eGFR change in ml/min/1.73 m2 for each additional copy of the coded allele. Freq, frequency of coded allele.
Previously reported loci. Regulatory annotation for rs180996919 (DHS, H3K4me1 muscle) and rs116951054 (DHS, H3K4me1 kidney).