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. 2021 Jan 12;12:2. doi: 10.1186/s13100-020-00230-y

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — Dfam TE classification system and visualization tool. a A small portion of the Dfam TE classification tree depicted using the dynamic visualization found at the Dfam website. Filled in circles represent internal nodes of the tree while hollow circles are leaf nodes in the classification tree. A classification is specified by concatenating the path through the classification tree. For example, the classification “Interspersed_Repeat;Unknown” is highlighted in the tree. b In addition, wherever possible a mapping is provided between classification systems. The Dfam classification for the L1 group of LINEs is shown with the equivalent classifications in several other systems