Table 1. The details of the primers used for T-ARMS-PCR, RSM, and HRM analysis.
Mutations | Sequence (5′->3′) forward and reverse | Ta | Product (bp) | |
---|---|---|---|---|
T-ARMS-PCR | A395T | FOP: TAGCATGGCAATTACTTTACTCCTTA | 60°C | Outer primers: 474 |
ROP: GTTGAGTTTTCATAACACTAGCAACAC | A allele: 212 | |||
A allele: ACTCCTGTTTTTGGTAAAGGTGTTATATA | ||||
T allele: 318 | ||||
T allele: CCATTAATCTAGAGTTTGGACAATGAA | ||||
C461T | FOP: AAAGATAGAGTTCCAATGGTTTTCTACTGG | 60°C | Outer primers: 536 | |
ROP: TCAGCATACAATTGAGCAAATGATCT | C allele: 237 | |||
C allele: TTTGCTAAATTTGCTTTGACTACTGAGTC | T allele: 355 | |||
T allele: TGATCTTTGGAACATAGGTTTTGACAA | ||||
RSM | C461T | FP: TCTACTGGATCCCATGGTTTGG | 60°C | Amplicon: 571 |
RP: TGAGGTAATGGCAAGTTTGGG | ||||
HRM | A395T & C461T | FP: ACTCCTGTTTTTGGTAAAGGTGT | 60°C | Amplicon: 131 |
RP: ACTTCTTCTCTGATCTTTGGAACA |
FOP: Forward outer primer; ROP: Reverse outer primer, FP: Forward outer primer; RP: Reverse primer; Ta: Annealing Temperature, bp: Base pairs