Table 6.
Transcriptomic Datasets Used for Rodent and Human HCC/ICC
| GEO ID | Description | Method | PMID |
|---|---|---|---|
| Rodent HCC | |||
| GSE63574 | 5 HCCs from 8-month-old DEN-treated mice vs 4 normal livers | Microarray | 26161998 |
| GSE51188 | 3 HCCs from 9-month-old DEN-treated mice vs 6 non-tumoral tissues | Microarray | 24367269 |
| GSE34760 | 7 HCCs from 1-year-old DEN-treated mice vs 4 normal livers | Microarray | 22342966 |
| GSE73498 | 3 HCCs from DEN-treated rats vs 3 normal livers from untreated rats | Microarray | 22194203 |
| GSE66717 | 4 tumors from 10-month-old LPTENKO mice vs 3 normal livers | Microarray | 26627606 |
| GSE70681 | 3 tumors from 15-month-old LPTENKO mice vs 5 normal livers | Microarray | — |
| GSE2127 | 3 hepatic tumors vs non-tumoral tissues from 22-month-old Txnipmut mice | Microarray | 16607285 |
| GSE19004 | 4 tumors from Rb, p130, and p107 triple KO mice vs 4 normal livers from wild-type mice | Microarray | — |
| GSE25457 | 5 HCCs vs nontumoral tissues from 18-month-old MAT1AKO mice | Microarray | 21562899 |
| GSE26538 | 6 spontaneous HCCs vs non-tumoral tissues | Microarray | 21571946 |
| GSE29813 | 6 spontaneous HCCs vs non-tumoral tissues | Microarray | 23262642 |
| GSE31431 | 4 HCCs from 48-week-old PDGF overexpressing mice vs 4 normal livers | Microarray | 22651928 |
| GSE54054 | 3 tumors from 15-month-old aflatoxin-treated mice vs 3 normal livers | Microarray | 26035378 |
| GSE67316 | 6 HCCs from BDCA-treated mice vs 6 normal livers | Microarray | 26289556 |
| GSE77503 | 4 tumors from Akt/βCat-overexpressing mice vs 3 non-tumoral tissues | Microarray | 26844528 |
| GSE83596 | 5 tumors vs non-tumoral tissues from 20-week-old STAMTM mice | Microarray | — |
| GSE63027 | 4 tumors from 8-month-old GNMTKO mice vs 5 normal livers | Microarray | 25993042 |
| Human HCC | |||
| GSE14811 | 56 HCCs vs matched non-tumoral tissue | Microarray | 15607117 |
| GSE22058 | 96 HCCs vs matched non-tumoral tissue | Microarray | 20739924, 22403344 |
| GSE47595 | 44 HCCs vs matched non-tumoral tissue | Microarray | 24498002 |
| GSE57957 | 37 HCCs vs matched non-tumoral tissue | Microarray | 25093504 |
| GSE60502 | 18 HCCs vs matched non-tumoral tissue | Microarray | 25376302 |
| GSE64041 | 60 HCCs vs matched non-tumoral tissue | Microarray | 27499918 |
| GSE76427 | 115 HCCs vs 52 non-tumoral tissue | Microarray | 29117471 |
| GSE89377 | 13 normal livers vs 9 HCCs grade 1, 12 HCCs grade 2, and 14 HCCs grade 3 | Microarray | — |
| Human ICC | |||
| GSE26566 | 104 ICCs vs 59 non-tumoral livers and 6 normal bile ducts | Microarray | 22178589 |