Table 3.
Organism, assigned label, and number of samples in the unique sequences for the NGDC repository (left) and query: gene = “ORF1ab” AND host = “homo sapiens” AND “complete genome” in the NCBI repository (right).
| Organism | Label | Number of samples | Organism | Label | Number of samples |
|---|---|---|---|---|---|
| SARS-CoV-2 | 0 | 96 | SARS-CoV-2 | 0 | 68 |
| MERS-CoV | 1 | 236 | MERS-CoV | 1 | 180 |
| HCoV-EMC | 1 | 4 | HCoV-HKU1 | 1 | 13 |
| HCoV-OC43 | 2 | 138 | HCoV-OC43 | 1 | 105 |
| HCoV-229E | 2 | 22 | HCoV-NL63 | 1 | 29 |
| HCoV-4408 | 2 | 2 | HCoV-4408 | 1 | 2 |
| HCoV-NL63 | 3 | 58 | HCoV-229E | 1 | 3 |
| HCoV-HKU1 | 3 | 17 | HCoV-EMC | 1 | 3 |
| SARS-CoV | 4 | 7 | HAstV-VA1 | 1 | 1 |
| SARS-CoV P2 | 4 | 1 | HAstV-BF34 | 1 | 1 |
| SARS-CoV HKU-39849 | 4 | 1 | HMO-A | 1 | 1 |
| SARS-CoV GDH-BJH01 | 4 | 1 | HAstV-SG | 1 | 1 |
| Total samples | – | 583 | Total samples | – | 407 |
We use the NCBI organism naming convention44.