Table 1.
Microbial composition at phylum level in cecal samples of rabbits grouped by farm
| Phylum | Mean relative abundance in farm A (%) (SD) | Mean relative abundance in farm B (%) (SD) | Estimated difference farm A - farm B ± SE | PFDR |
|---|---|---|---|---|
| Actinobacteria | 1.62 (0.67) | 1.84 (0.33) | − 0.14 ± 0.08 | 0.09 |
| Bacteroidetes | 6.84 (1.81) | 4.03 (0.70) | 2.74 ± 0.22 | 0.00 |
| Cyanobacteria | 0.77 (0.40) | 1.05 (0.36) | −0.39 ± 0.05 | 0.00 |
| Euryarchaeota | 0.13 (0.19) | 0.44 (0.17) | −0.28 ± 0.02 | 0.00 |
| Firmicutes | 75.83 (3.34) | 79.66 (1.53) | −3.78 ± 0.41 | 0.00 |
| Proteobacteria | 1.83 (0.62) | 0.66 (0.12) | 1.14 ± 0.07 | 0.00 |
| Tenericutes | 7.21 (1.47) | 7.25 (0.93) | 0.00 ± 0.18 | 0.99 |
| Verrucomicrobia | 1.62 (0.45) | 0.91 (0.24) | 0.68 ± 0.05 | 0.00 |