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. 2020 Dec 1;40(2):e105926. doi: 10.15252/embj.2020105926
Reagent/Resource Reference or source Identifier or catalog number
Experimental models
Mouse: B6.SJL‐Ptprcapepcb/BoyJ The Jackson Laboratory JAX: 002014
Mouse: C57BL/6 The Jackson Laboratory JAX: 000664
Mouse: PGT121 κ KI mouse model This paper N/A
Mouse: CLK21 BCR KI mouse model This paper N/A
Mouse: CLK09 BCR KI mouse model This paper N/A
Antibodies
PerCP/Cy5.5 anti‐mouse CD45.1 Antibody BioLegend Cat#: 110728
PE‐Cy™7 Hamster Anti‐Mouse CD95 BD Biosciences Cat#: 557653
Brilliant Violet 785™ anti‐mouse CD45.2 BioLegend Cat#: 109839
anti‐mouse CD38, BV510 BD Biosciences Cat#: 740129
Pacific Blue™ anti‐mouse/human CD45R/B220 Antibody BioLegend Cat#: 103227
BV711 Rat Anti‐Mouse Ig, λ1, λ2 & λ3 Light Chain BD Biosciences Cat#: 744527
BUV395 Rat Anti‐Mouse Ig, κ light chain BD Biosciences Cat#: 742839
APC/Cy7 anti‐mouse/human CD45R/B220 Antibody BioLegend Cat#: 103224
BV421 Rat Anti‐Mouse IgM BD Biosciences Cat#: 743323
PE/Cy7 anti‐mouse IgD Antibody BioLegend Cat#: 405720
PE anti‐mouse CD45.2 Antibody BioLegend Cat#: 109808
Anti‐mouse CD38 Alexa700 Invitrogen Cat#: 56‐0381‐82
BV786 Rat Anti‐Mouse IgD BD Biosciences Cat#: 563618
BV510 Rat Anti‐Mouse B220/CD45R Clone RA3‐6B2 BD Biosciences Cat#: 563103
BV421 Rat Anti‐Mouse IgG1 BD Biosciences Cat#: 562580
BUV395 Rat Anti‐Mouse IgM BD Biosciences Cat#: 743329
PE anti‐mouse CD80 antibody BioLegend Cat#: 104708
APC/Cyanine7 anti‐mouse CD73 Antibody BioLegend Cat#: 127232
GL7 Monoclonal Antibody (GL‐7 (GL7)), eFluor 450 Thermo Fisher Cat#: 48‐5902‐82
BUV395 Rat Anti‐Mouse CD273 BD Biosciences Cat#: 565102
CD4 Monoclonal Antibody (GK1.5), APC‐eFluor 780 Invitrogen Cat#: 47‐0042‐80
CD8a Monoclonal Antibody (53‐6.7), APC‐eFluor 780 Invitrogen Cat#: 47‐0081‐80
F4/80 Monoclonal Antibody (BM8), APC‐eFluor 780 Invitrogen Cat#: 47‐4801‐80
Ly‐6G Monoclonal Antibody (1A8‐Ly6g), APC‐eFluor 780 Invitrogen Cat#: 47‐5931‐80
Alexa Fluor® 488 anti‐mouse CD38 Antibody BioLegend Cat#: 102714
Alexa Fluor® 647 anti‐mouse/human GL7 Antigen BioLegend Cat#: 144606
Alexa Fluor® 594 anti‐mouse/human CD45R/B220 Antibody BioLegend Cat#: 103254
Alkaline Phosphatase AffiniPure Goat Anti‐Mouse IgG, Fcγ Fragment Specific Jackson ImmunoResearch Cat#: 115‐055‐071
Purified Rat Anti‐Mouse CD16/CD32 (Mouse BD Fc Block™ BD Biosciences Cat#: 553142
Alexa Fluor® 488 anti‐mouse CD45.2 Antibody BioLegend Cat#: 109816
Alexa Fluor® 594 anti‐mouse CD3 Antibody BioLegend Cat#: 100240
Oligonucleotides and other sequence‐based reagents
TaqMan probes for genotyping TransnetYX Appendix Table S1
Primers for RT–PCR GENEWIZ Appendix Table S6
Index primers for NGS, Integrated DNA Technologies Appendix Table S7
sgRNA Synthego Table 1
Chemicals, enzymes and other reagents
LIVE/DEAD™ Fixable Blue Dead Cell Stain Kit, for UV excitation Thermo Fisher Scientific Cat#: L34962
Alexa Fluor 488 Streptavidin BioLegend Cat#: 405235
Alexa Fluor 647 Streptavidin BioLegend Cat#: 405237
Alexa Fluor 594 Streptavidin BioLegend Cat#: 405240
Pan B‐Cell Isolation Kit II, mouse Miltenyi Biotec Cat#: 130‐104‐443
SuperScript™ III Reverse Transcriptase Thermo Fisher Cat#: 18080085
RNeasy® Protect Animal Blood Kit Qiagen Cat#:73224

Maxima First Strand

cDNA Synthesis Kit

Thermo Fisher Scientific Cat#: K1672
PrimeSTAR® HS DNA Polymerase premix Takarabio Cat#: R040A
HIFI HOTSTART READYMIX 500RXN Kapa Biosystems Cat#: KK2602
HotStarTaq DNA Polymerase Qiagen Cat#: 203205
RNasin® Ribonuclease Inhibitors (Recombinant) Promega Cat#: N2515
CountBright™ Absolute Counting Beads, for flow cytometry Thermo Fisher Scientific Cat#: C36950
SIGMAFAST™ p‐Nitrophenyl phosphate Tablets Sigma Cat#: N2770‐50SET
NP40 Millipore Cat#: 492016‐100ML
UltraComp eBeads™ Compensation Beads Thermo Fisher Scientific 01‐2222‐42
Tissue‐Tek® O.C.T. Compound, Sakura® Finetek VWR 25608‐930
eOD‐GT8 60mer Jardine et al (2015) N/A
eOD‐GT8 KO 60mer Jardine et al (2015) N/A
eOD‐GT8 soluble protein Sok et al (2016) N/A
eOD‐GT8 KO soluble protein Sok et al (2016) N/A
Software
Flowjo X Treestar https://www.flowjo.com/
Prism 8 GraphPad https://www.graphpad.com/
Microsoft Office Microsoft https://www.office.com/
IMGT/V‐quest http://www.imgt.org/IMGTindex/V‐QUEST.php
Geneious Prime Biomatters https://www.geneious.com/
Other
Master Cycler PCR machine Eppendorf
ELISA readers BioTek
Zeiss Elyra PS.1 confocal microscope Zeiss
5 laser LSR Fortessa BD