Reagent/Resource | Reference or source | Identifier or catalog number |
---|---|---|
Experimental models | ||
Mouse: B6.SJL‐Ptprcapepcb/BoyJ | The Jackson Laboratory | JAX: 002014 |
Mouse: C57BL/6 | The Jackson Laboratory | JAX: 000664 |
Mouse: PGT121 κ KI mouse model | This paper | N/A |
Mouse: CLK21 BCR KI mouse model | This paper | N/A |
Mouse: CLK09 BCR KI mouse model | This paper | N/A |
Antibodies | ||
PerCP/Cy5.5 anti‐mouse CD45.1 Antibody | BioLegend | Cat#: 110728 |
PE‐Cy™7 Hamster Anti‐Mouse CD95 | BD Biosciences | Cat#: 557653 |
Brilliant Violet 785™ anti‐mouse CD45.2 | BioLegend | Cat#: 109839 |
anti‐mouse CD38, BV510 | BD Biosciences | Cat#: 740129 |
Pacific Blue™ anti‐mouse/human CD45R/B220 Antibody | BioLegend | Cat#: 103227 |
BV711 Rat Anti‐Mouse Ig, λ1, λ2 & λ3 Light Chain | BD Biosciences | Cat#: 744527 |
BUV395 Rat Anti‐Mouse Ig, κ light chain | BD Biosciences | Cat#: 742839 |
APC/Cy7 anti‐mouse/human CD45R/B220 Antibody | BioLegend | Cat#: 103224 |
BV421 Rat Anti‐Mouse IgM | BD Biosciences | Cat#: 743323 |
PE/Cy7 anti‐mouse IgD Antibody | BioLegend | Cat#: 405720 |
PE anti‐mouse CD45.2 Antibody | BioLegend | Cat#: 109808 |
Anti‐mouse CD38 Alexa700 | Invitrogen | Cat#: 56‐0381‐82 |
BV786 Rat Anti‐Mouse IgD | BD Biosciences | Cat#: 563618 |
BV510 Rat Anti‐Mouse B220/CD45R Clone RA3‐6B2 | BD Biosciences | Cat#: 563103 |
BV421 Rat Anti‐Mouse IgG1 | BD Biosciences | Cat#: 562580 |
BUV395 Rat Anti‐Mouse IgM | BD Biosciences | Cat#: 743329 |
PE anti‐mouse CD80 antibody | BioLegend | Cat#: 104708 |
APC/Cyanine7 anti‐mouse CD73 Antibody | BioLegend | Cat#: 127232 |
GL7 Monoclonal Antibody (GL‐7 (GL7)), eFluor 450 | Thermo Fisher | Cat#: 48‐5902‐82 |
BUV395 Rat Anti‐Mouse CD273 | BD Biosciences | Cat#: 565102 |
CD4 Monoclonal Antibody (GK1.5), APC‐eFluor 780 | Invitrogen | Cat#: 47‐0042‐80 |
CD8a Monoclonal Antibody (53‐6.7), APC‐eFluor 780 | Invitrogen | Cat#: 47‐0081‐80 |
F4/80 Monoclonal Antibody (BM8), APC‐eFluor 780 | Invitrogen | Cat#: 47‐4801‐80 |
Ly‐6G Monoclonal Antibody (1A8‐Ly6g), APC‐eFluor 780 | Invitrogen | Cat#: 47‐5931‐80 |
Alexa Fluor® 488 anti‐mouse CD38 Antibody | BioLegend | Cat#: 102714 |
Alexa Fluor® 647 anti‐mouse/human GL7 Antigen | BioLegend | Cat#: 144606 |
Alexa Fluor® 594 anti‐mouse/human CD45R/B220 Antibody | BioLegend | Cat#: 103254 |
Alkaline Phosphatase AffiniPure Goat Anti‐Mouse IgG, Fcγ Fragment Specific | Jackson ImmunoResearch | Cat#: 115‐055‐071 |
Purified Rat Anti‐Mouse CD16/CD32 (Mouse BD Fc Block™ | BD Biosciences | Cat#: 553142 |
Alexa Fluor® 488 anti‐mouse CD45.2 Antibody | BioLegend | Cat#: 109816 |
Alexa Fluor® 594 anti‐mouse CD3 Antibody | BioLegend | Cat#: 100240 |
Oligonucleotides and other sequence‐based reagents | ||
TaqMan probes for genotyping | TransnetYX | Appendix Table S1 |
Primers for RT–PCR | GENEWIZ | Appendix Table S6 |
Index primers for NGS, | Integrated DNA Technologies | Appendix Table S7 |
sgRNA | Synthego | Table 1 |
Chemicals, enzymes and other reagents | ||
LIVE/DEAD™ Fixable Blue Dead Cell Stain Kit, for UV excitation | Thermo Fisher Scientific | Cat#: L34962 |
Alexa Fluor 488 Streptavidin | BioLegend | Cat#: 405235 |
Alexa Fluor 647 Streptavidin | BioLegend | Cat#: 405237 |
Alexa Fluor 594 Streptavidin | BioLegend | Cat#: 405240 |
Pan B‐Cell Isolation Kit II, mouse | Miltenyi Biotec | Cat#: 130‐104‐443 |
SuperScript™ III Reverse Transcriptase | Thermo Fisher | Cat#: 18080085 |
RNeasy® Protect Animal Blood Kit | Qiagen | Cat#:73224 |
Maxima First Strand cDNA Synthesis Kit |
Thermo Fisher Scientific | Cat#: K1672 |
PrimeSTAR® HS DNA Polymerase premix | Takarabio | Cat#: R040A |
HIFI HOTSTART READYMIX 500RXN | Kapa Biosystems | Cat#: KK2602 |
HotStarTaq DNA Polymerase | Qiagen | Cat#: 203205 |
RNasin® Ribonuclease Inhibitors (Recombinant) | Promega | Cat#: N2515 |
CountBright™ Absolute Counting Beads, for flow cytometry | Thermo Fisher Scientific | Cat#: C36950 |
SIGMAFAST™ p‐Nitrophenyl phosphate Tablets | Sigma | Cat#: N2770‐50SET |
NP40 | Millipore | Cat#: 492016‐100ML |
UltraComp eBeads™ Compensation Beads | Thermo Fisher Scientific | 01‐2222‐42 |
Tissue‐Tek® O.C.T. Compound, Sakura® Finetek | VWR | 25608‐930 |
eOD‐GT8 60mer | Jardine et al (2015) | N/A |
eOD‐GT8 KO 60mer | Jardine et al (2015) | N/A |
eOD‐GT8 soluble protein | Sok et al (2016) | N/A |
eOD‐GT8 KO soluble protein | Sok et al (2016) | N/A |
Software | ||
Flowjo X | Treestar | https://www.flowjo.com/ |
Prism 8 | GraphPad | https://www.graphpad.com/ |
Microsoft Office | Microsoft | https://www.office.com/ |
IMGT/V‐quest | http://www.imgt.org/IMGTindex/V‐QUEST.php | |
Geneious Prime | Biomatters | https://www.geneious.com/ |
Other | ||
Master Cycler PCR machine | Eppendorf | |
ELISA readers | BioTek | |
Zeiss Elyra PS.1 confocal microscope | Zeiss | |
5 laser LSR Fortessa | BD |