Table 2. .
Summary of detected nucleotide SNPs among COVID-19 isolates
| NO | AC # | Country | Isolate | Length, nt |
Nt SNPs | SNPs |
|---|---|---|---|---|---|---|
| 1 | LR757995.1 | China | Whole genome | 29 872 | T28129C, C8767T | 2 |
| 2 | LR757996.1 | China | Whole genome | 29 868 | ||
| 3 | LR757998.1 | China | Whole genome | 29 866 | C6943A, T11739A | 2 |
| 4 | MN988668.1 | China | WHU01 | 29 881 | ||
| 5 | MN996527.1 | China | WIV02 | 29 825 | G21292A, A24292G | 2 |
| 6 | MN996528.1 | China | WIV04 | 29 891 | ||
| 7 | MN996529.1 | China | WIV05 | 29 852 | G7004A, A21125G | 2 |
| 8 | MN996530.1 | China | WIV06 | 29 854 | ||
| 9 | MN996531.1 | China | WIV07 | 29 857 | A7988C, C9521T, | 2 |
| 10 | MT019529.1 | China | IPBCAMS-WH-01 | 29 899 | A3778G, A8388G, T8987A | 3 |
| 11 | MT019530.1 | China | IPBCAMS-WH-02 | 29 889 | T104A, T111C, T112G, C119G, T120C, G124A | 6 |
| 12 | MT019531.1 | China | IPBCAMS-WH-03 | 29 899 | T6996C | 1 |
| 13 | MT019532.1 | China | IPBCAMS-WH-04 | 29 890 | ||
| 14 | MT019533.1 | China | IPBCAMS-WH-05 | 29 883 | G7866T | 1 |
| 15 | MT039873.1 | China | HZ-1, 1st case | 29 833 | ||
| 16 | NC_045512.2 | China | Wuhan-Hu-1 | 29 903 | ||
| 17 | MT049951.1 | China | Yunnan-01 | 29 903 | C75A, C8782T,G11083C, T21644A, T28144C | 5 |
| 18 | MN985325.1 | USA | USA-WA1 | 29 882 | C8782T, T28144C | 2 |
| 19 | MN994468.1 | USA | USA-CA2 | 29 883 | C17000T, G26144T | 2 |
| 20 | MT027062.1 | USA | USA-CA3 | 29 882 | G614A, A5084G, C28854T | 3 |
| 21 | MT027064.1 | USA | USA-CA5 | 29 882 | C2091T, C21707T | 2 |
| 22 | MT044258.1 | USA | USA-CA6 | 29 858 | Del 508-523, del 671-679, | 2 |
| 23 | MT039888.1 | USA | USA-MA1 | 29 882 | G3518T, C8782T,A17423G, C24034T C28854T | 5 |
| 24 | MT039887.1 | USA | USA-WI1 | 29 879 | C17373T, del 20298-20300, | 2 |
| 25 | MN988713.1 | USA | USA-IL1 | 29 882 | T490W,C3177Y, C8782Y, C24034Y, T26729Y, G28077S, T28144Y, C28854Y | 8 |
| 26 | MT044257.1 | USA | USA-IL2 | 29 882 | T490A, C3177T, C8782T, C24034T, T26729C, G28077C, T28144C | 7 |
| 27 | MN997409.1 | USA | USA-AZ1 | 29 882 | C8782T,G11083T, T28144C, C29095T | 4 |
| 28 | LC521925.1 | Japan | AI-I-004 | 29 848 | Del 351-374, C18485T, C18485T | 3 |
| 29 | LC522972.1 | Japan | KY-V-029 | 29 878 | G11554T, C15321T, C25807G, C29300T | 4 |
| 30 | LC522973.1 | Japan | TY-WK-012 | 29 878 | C2659T, C8779T C3789T, C29092T, T28141C | 5 |
| 31 | LC522974.1 | Japan | TY-WK-501 | 29 878 | C2659T, C8779T, C29092T, T28141C | 4 |
| 32 | LC522975.1 | Japan | TY-WK-521 | 29 878 | C2659T, C8779T, C29092T, G29702T, T28141C | 5 |
| 33 | MN938384.1 | H Kong | HKU-SZ-002a | 29 838 | C8750T, C29063T | 2 |
| 34 | MN975262.1 | H Kong | HKU-SZ-005b | 29 891 | C8782T,C9561T, T15607C, C29095T, T28144C | 5 |
| 35 | MT066175.1 | Taiwan | NTU01 | 29 870 | C8782T, T28144C | 2 |
| 36 | MT066176.1 | Taiwan | NTU02 | 29 870 | A9034G, C9491T | 2 |
| 37 | MT007544.1 | Ausuralia | Australia-VIC01 | 29 893 | T19065C, T22303G, G26144T,del 2974029950 | 4 |
| 38 | MT039890.1 | Korea | SNU01 | 29 903 | G2969T, C6031T, C12115T, T15597C, C20936G, C22224G, G25775T, G26144T, T26354A | 9 |
| Total | 1 135 284 | 108 | ||||
| SARS-CoV-1 | ||||||
| 39 | AY310120.1 | Germany | SARS-CoV-1-FRA | 29 740 | T18965A, C19084T, C24933T, C26660T, C28268T | 5 |
| 40 | AY323977.2 | Italy | SARS-CoV-1-HSR1 | 29 751 | G27254R | 1 |
| 41 | DQ182595.1 | China | SARS-CoV-1ZJ0301 | 29 706 | Del1-16, A12965C,T14022A, A14976T, C17478G, T17518A,C22573T | 7 |
| Total | 89 197 | 13 |