TABLE 3.
The characteristics of microarray and sequencing dataset
| Dataset ID | Platform | Detection method | Participants region | Mean age (years) | HIV+ number | Treatment status | Diagnosis method | Group setting | Sample type | NcRNAa type |
|---|---|---|---|---|---|---|---|---|---|---|
| GSE131174 | GPL16791 | Sequencing | South America | >18 | NAb | Some | Comprehensive diagnosis | TBc, untreated LTBId, treated LTBI and HCe | WBf | MiRNAg and snoRNAh |
| GSE34608 | GPL7731 | Microarray | Central Europe | >18 | 0 | None | NA | TB, sarcoidosis and HC | WB | MiRNA |
| GSE39163 | GPL7731 | Microarray | Mixed Europe | NA | NA | NA | Aetiological evidence, radiology and TSTi | TB and LTBI | WB | MiRNA |
| GSE119494 | GPL11154 | Sequencing | East Asia | >18 | 0 | NA | Symptom, radiology and culture | TB and HC | PBMCj | MiRNA |
| GSE131708 | GPL23365 | Microarray | East Asia | ≥18 | 0 | NA | Culture, smear or Xpert | TB, viral meningitis and HC | PBMC | MiRNA |
| GSE15977 | GPL8227 | Microarray | East Asia | NA | NA | NA | NA | TB, LTBI and HC | PBMC | MiRNA |
| GSE25435 | GPL10850 | Microarray | East Asia | NA | NA | NA | NA | TB, LTBI and HC | PBMC | MiRNA |
| GSE29190 | GPL10850 | Microarray | East Asia | ≥18 | 0 | None | Symptom, smear and radiology | TB, LTBI and HC | PBMC | MiRNA |
| GSE70425 | GPL15159 | Microarray | South Africa | >18 | 0 | None | Symptom, radiology and culture | TB and LTBI |
Monocytes Granulocytes |
MiRNA |
| SRP029907* | / | Sequencing | East Asia | >18 | 0 | None | Symptom, culture and radiology | TB and LTBI | Serum | MiRNA |
| SRP032650* | / | Sequencing | NA | NA | NA | NA | NA | TB, LTBI, HC with BCGk and HC without BCG | Serum | MiRNA |
| GSE116542 | GPL19117 | Microarray | East Asia | >18 | 0 | None | Culture | TB and HC | Exosome | MiRNA |
| GSE124120 | GPL16791 | Sequencing | East Asia | ≥18 | 0 | NA | Culture and smear | TB, LTBI and HC | Exosome | MiRNA |
| GSE101805 | GPL16956 | Microarray | East Asia | NA | 0 | NA | Culture and smear | TB, pneumonia and HC | Plasma | LncRNAl |
| GSE103188 | GPL23259 | Microarray | East Asia | >18 | 0 | NA | Comprehensive diagnosis | TB and HC | PBMC | CircRNAm |
| GSE117563 | GPL21825 | Microarray | East Asia | >18 | 0 | None | Symptom and culture or smear | TB and HC | PBMC | CircRNA |
| GSE106953 | GPL21825 | Microarray | East Asia | >18 | 0 | None | Symptom and culture or smear | TB and HC | Plasma | CircRNA |
a: non‐coding RNA; b: non‐available; c: tuberculosis; d: latent tuberculosis infection; e: healthy control; f: whole blood; g: microRNA; h: small nucleolar RNA; i: tuberculin skin test; j: peripheral blood mononuclear cell; k: bacillus Calmette‐Guérin; l: long non‐coding RNA; m: circular RNA.
*
These 2 datasets were stored in Sequence Read Archive (SRA) database.