Table 5.

Summary of DETs and their gene families in efficient and non-efficient genotypes under low N

	Efficient		Non-efficient
	Up	Down	Up	Down
Nitrogen metabolism	–	EAY84173gi hypothetical protein	Os08g0468100 Nitrate reductase [NADH] 1	Os01g0764900 Formamidase Os03g0712800 Glutamine synthetase cytosolic
Vitamin and cofactor metabolism	Os08g0245400 Bifunctionaldethiobiotinsynthetase ABA93693gi Bifunctionaldihydrofolatereductase Os02g0276500 Putative tocopherolcyclase	–	–	–
Transcription factors (TF)	Os12g0618600-CCAAT-binding TF subunit B Os03g0741400 WRKY TF ADX60281 bHLH TF Os01g0625300 Heat stress TF C-1a	AAM27466gi Putative bHLH TF DAA05141gi WRKY TF 76 Os03g0437200 C2H2-type zinc finger protein ZFP36 CAC39058gi putative AP2-related TF Os01g0821300 WRKY TF 64-like protein	Os10g0503100 LIM TF BAD29571gi putative TF MADS27 BAD31424gi PHD finger TF-like protein Os06g0679400 putative TF GAMyb Os08g0103900 putative OsNAC7 protein	AAP83325gi TF Os09g0538400 putative Myb-related protein Zm38 DAA05124gi WRKY TF 59 Os02g0643200 YABBY 4 TF Os03g0764100 zinc finger TF ZF1
Transporters (TPR)	BAB17113gi ABC TPR-like Q93XI5gi potassium-sodium symporter Os01g0279700 Phosphate TPR ABA91534gi ABC TPR Os03g0195800 Sulfate TPR 1.2	ACN85155gi ABC TPR-like protein Os06g0228800 putative amino acid TPR BAC83382gi putative organic cation TPR AAT77331gi putative ABC TPR Os03g0150500 H/Pi co TPR	Os05g0252000 Probable metal-nicotianamine TPR YSL4 XP_004972812gi nitrate TPR 1.1-like isoform X2 BAC83856gi putative nitrate TPR NRT1-5 Os01g0829900 Probable metal-nicotianamine TPR YSL18 Os11g0475600 hexose TPR	Os03g0281900 ABC TPR G family member 5 AAP53801gi Sulfate TPR 3.1, putative BAB63609gi putative nitrite TPR BAB92574gi proline transport protein-like Os07g0557200 putative equilibrative nucleoside TPR ENT8 splice variant