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. 2021 Jan 14;9:e10704. doi: 10.7717/peerj.10704

Table 3. Differentially expressed miRNAs under the TOR inhibition in potato involved in catabolic process, anabolic process and biosynthetic pathways.

MiRNA Target gene_id Log2FoldChange Pval Gene description
Ribosome
stu-miR8020 PGSC0003DMG400030153 −0.31601 1.55E−04 Ribosomal protein L18a
Biosynthesis of amino acids
stu-miR7983-5p PGSC0003DMG400022088 −0.40026 1.28E−07 Transketolase, C-terminal
Cutin, suberine and wax biosynthesis
stu-miR8011a-3p PGSC0003DMG400004844 −0.77456 4.95E−07 Glucose-methanol-choline oxidoreductase, N-terminal
Phenylpropanoid biosynthesis
stu-miR4376-3p PGSC0003DMG400020795 −2.9897 1.54E−06 Haem peroxidase, plant/fungal/bacterial
stu-miR5303c PGSC0003DMG400003013 −0.60889 3.06E−04 Glycoside hydrolase family 3
stu-miR7983-5p PGSC0003DMG400005872 −2.6826 2.42E−19 Plant peroxidase
stu-miR4376-3p PGSC0003DMG400022541 −0.73675 1.21E−03 Haem peroxidase, plant/fungal/bacterial
stu-miR4376-3p PGSC0003DMG400020801 −3.3592 4.72E−10 Peroxidases heam-ligand binding site
Ubiquinone and other terpenoid-quinone biosynthesis
stu-miR7997a PGSC0003DMG400021276 2.1196 3.17E−19 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
stu-miR8045 PGSC0003DMG400017707 0.52448 3.78E−08 4-hydroxyphenylpyruvate dioxygenase
Phenylalanine, tyrosine and tryptophan biosynthesis
stu-miR5303 h,stu-miR5303j PGSC0003DMG400011282 1.4353 4.63E−03 Tryptophan synthase, beta chain, conserved site
stu-miR7997a PGSC0003DMG400021276 2.1196 3.17E−19 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Isoquinoline alkaloid biosynthesis
stu-miR7997a PGSC0003DMG400021276 2.1196 3.17E−19 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Pantothenate and CoA biosynthesis
stu-miR5303 h,stu-miR5303j,stu-miR7997a PGSC0003DMG400013511 0.37163 1.54E−04 ATCOAA—Type II pantothenate kinase
Tropane, piperidine and pyridine alkaloid biosynthesis
stu-miR7997a PGSC0003DMG400021276 2.1196 3.17E−19 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Fatty acid elongation
stu-miR8004 PGSC0003DMG400014549 0.73372 1.65E−04 Thiolase-like
Carotenoid biosynthesis
stu-miR5303 h,stu-miR5303j PGSC0003DMG402018475 1.1371 1.49E−03 Cytochrome P450
Zeatin biosynthesis
stu-miR5303 h,stu-miR5303j PGSC0003DMG400023732 1.0493 3.57E−08 UDP-glucuronosyl/UDP-glucosyltransferase
Biosynthesis of unsaturated fatty acids
stu-miR8050-5p PGSC0003DMG400020620 0.40349 8.59E−06 ACX2—Acyl-CoA dehydrogenase/oxidase C-terminal
Lysine degradation
stu-miR5303c PGSC0003DMG400001557 −0.33784 2.01E−03 Histone H3-K9 methyltransferase, plant
Regulation of autophagy
stu-miR5303 h,stu-miR5303j,stu-miR7997a PGSC0003DMG402022314 0.28852 2.09E−03 Ubiquitin-related domain
stu-miR7997a PGSC0003DMG402012477 0.33886 3.04E−04 Autophagy protein Atg8 ubiquitin-like
Ubiquitin mediated proteolysis
stu-miR5303 h,stu-miR5303j,stu-miR7997a PGSC0003DMG400003897 0.29401 1.31E−03 Zinc finger, RING-type
stu-miR5303 h,stu-miR5303j,stu-miR7997a PGSC0003DMG400019395 0.43331 9.66E−07 Ubiquitin-conjugating enzyme/RWD-like
Fatty acid degradation
stu-miR8050-5p PGSC0003DMG400020620 0.40349 8.59E−06 ACX2—Acyl-CoA dehydrogenase/oxidase C-terminal
Valine, leucine and isoleucine degradation
stu-miR5303 h,stu-miR5303j PGSC0003DMG400011330 0.7956 4.46E−15 BCE2—Chloramphenicol acetyltransferase-like domain