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Read statistics of amplicon sequencing in environmental samples
| Samples | Primer sets | Total reads | Merged QC reads | Denoised chimera-free reads | CODH-OTUs | CODH-OTUs within FirmiCODHech subclades | ||
|---|---|---|---|---|---|---|---|---|
| # of reads | # of OTUs | # of reads | # of OTUs | |||||
| UN | F4a_p1 | 81,415 | 68,345 | 39,136 | 37,080 | 53 | 0 | 0 |
| UN | F4c1_p1 | 68,241 | 63,494 | 41,677 | 41,316 | 5 | 41,316 | 5 |
| UN | F4c1_p2 | 73,395 | 67,320 | 40,855 | 36,766 | 3 | 36,766 | 3 |
| JI | F4a_p1 | 112,727 | 89,115 | 46,348 | 41,502 | 26 | 0 | 0 |
| JI | F4c2_p1 | 169,495 | 128,748 | 87,391 | 62,379 | 3 | 62,379 | 3 |
