Table 1. An overview of the sequencing results and their comparison with the reference genome.

Sample name	0 d (%)	1 d (%)	4 d (%)	7 d (%)
Total reads	69,849,782	65,483,181	67,567,197	61,436,657
Total mapped	66,244,619 (94.84)	62,525,227 (95.48)	64,535,271 (95.51)	58,640,030 (95.45)
Multiple mapped	942,300 (1.35)	1,053,361 (1.61)	990,633 (1.47)	938,586 (1.53)
Uniquely mapped	65,302,319 (93.49)	61,471,866 (93.87)	63,544,638 (94.05)	57,701,444 (93.92)
Read1 mapped	33,119,020 (47.41)	31,263,297 (47.74)	32,265,191 (47.75)	29,318,677 (47.72)
Read2 mapped	33,125,599 (47.42)	31,261,930 (47.74)	32,270,080 (47.76)	29,321,353 (47.73)
Reads map to ‘+’	33,159,453 (47.47)	31,306,957 (47.81)	32,314,806 (47.83)	29,360,597 (47.79)
Reads map to ‘−’	33,085,166 (47.37)	31,218,270 (47.67)	32,220,465 (47.69)	29,279,433 (47.66)
Reads mapped in proper pairs	62,110,832 (88.92)	58,494,504 (89.33)	60,404,186 (89.40)	54,970,454 (89.48)

Note: “+” refers to sense strands, “−” indicates anti-sense strands.