Table 1.
Identification of Dermanyssus gallinae core RNA interference pathway genes
| Gene name (gene symbol) | Tetranychus urticae accession | D. gallinae ortholog/s gene accession | (Gene #); top BLAST E-value |
|---|---|---|---|
| Dicer (Dcr) | tetur19g00520; tetur07g00990 | DEGAL4207g00210; DEGAL2576g00010 | (2); 0 |
| Partner of Drosha (Pasha) | tetur36g00220; tetur36g00250 | DEGAL6243g00040 | (1); 1.00E–105 |
| Drosha (Drosha) | tetur12g00910 | DEGAL3563g00160 | (1); 0.0 |
| Loquacious (loqs) | tetur13g00430; tetur13g00410 | DEGAL6165g00020e; DEGAL6165g00030e | (2); 5.00E–20 |
| Argonaute (AGO) | tetur20g02910; tetur09g00620; tetur09g03140; tetur02g10560; tetur02g10580; tetur04g01190; tetur02g10570 |
DEGAL5747g00010; DEGAL5147g00020c; DEGAL2433g00050; EGAL1807g00010; DEGAL5891g00010; DEGAL2763g00020; DEGAL2329g00030; DEGAL3376g00010; DEGAL1832g00030; DEGAL3253g00060b; DEGAL3253g00070b; DEGAL5243g00010; DEGAL3253g00080b; DEGAL3253g00100b; DEGAL867g00020g; DEGAL5130g00010; DEGAL4347g00070; DEGAL1695g00010a; DEGAL1695g00020a; DEGAL4104g00020; DEGAL867g00010g; DEGAL6462g00020f; DEGAL6462g00010f; DEGAL2892g00010; DEGAL5147g00040c |
(25); 0 |
| P-element induced wimpy testis (Piwi); Aubergine (aub); Argonaute-3 (AGO3) | tetur06g03300; tetur28g00450; tetur28g00340; tetur06g05580; tetur06g05570; tetur06g05600; tetur17g03380 | N/A | (0); N/A |
| Exportin-5 (Exportin-5) | tetur02g00520; tetur02g00500 | DEGAL4407g00370 | (1); 3.00E–28 |
|
RNA-directed RNA polymerase (RdRP) |
tetur02g08750; tetur02g08780; tetur02g08810; tetur02g08820 |
DEGAL1833g00010; DEGAL2592g00050; DEGAL4182g00030; EGAL2262g00020; DEGAL6675g00010; DEGAL6621g00090; DEGAL6161g00150d; GAL3284g00080; DEGAL6161g00170d |
(9); 1.00E–95 |
BLAST, Basic local alignment search tool; N/A, not available
a–gEach identified D. gallinae gene is an orthologue of T. urticae RNAi pathway genes based on best reciprocal BLAST hit. Genes located on the same D. gallinae scaffold are highlighted using the superscript letters a-g.