Table 2.
Number of genes associated with the general cluster of orthologous group (COG) functional categories in H. malpeensis YU-PRIM-29T genome.
| COG code | Number of genes | Percentage | Description |
|---|---|---|---|
| Cellular processes and signalling | |||
| D | 30 | 0.90 | Cell cycle control, cell division, chromosome partitioning |
| M | 121 | 3.63 | Cell wall/membrane/envelope biogenesis |
| N | 61 | 1.83 | Cell motility |
| O | 81 | 2.43 | Post-translational modification, protein turnover, chaperones |
| T | 67 | 2.01 | Signal transduction mechanisms |
| U | 34 | 1.02 | Intracellular trafficking, secretion, and vesicular transport |
| V | 29 | 0.87 | Defense mechanisms |
| W | 0 | 0.00 | Extracellular structures |
| Y | 0 | 0.00 | Nuclear structure |
| Z | 0 | 0.00 | Cytoskeleton |
| Information storage and processing | |||
| A | 1 | 0.03 | RNA processing and modification |
| B | 1 | 0.03 | Chromatin structure and dynamics |
| J | 193 | 5.78 | Translation, ribosomal structure and biogenesis |
| K | 62 | 1.86 | Transcription |
| L | 85 | 2.55 | Replication, recombination and repair |
| X | 17 | 0.51 | Mobilome: prophages, transposons |
| Metabolism | |||
| C | 127 | 3.81 | Energy production and conversion |
| E | 179 | 5.36 | Amino acid transport and metabolism |
| F | 68 | 2.04 | Nucleotide transport and metabolism |
| G | 89 | 2.67 | Carbohydrate transport and metabolism |
| H | 104 | 3.12 | Coenzyme transport and metabolism |
| I | 64 | 1.92 | Lipid transport and metabolism |
| P | 107 | 3.21 | Inorganic ion transport and metabolism |
| Q | 30 | 0.90 | Secondary metabolites biosynthesis, transport and catabolism |
| Poorly characterised | |||
| R | 120 | 3.60 | General function prediction only |
| S | 147 | 4.41 | Function unknown |
| – | 1520 | 45.55 | Not in COGs |