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. 2021 Jan 19;22:62. doi: 10.1186/s12864-020-07362-8

Fig. 4.

Fig. 4

Concordance of variant calls between experimental setups in RepeatMasker regions. Heatmaps show the pairwise concordance for SNPs (a, c, e, g, i) and indels (b, d f, h, j) in distinct RepeatMasker regions. Values correspond to the Jaccard distance, which ranges between 0 and 1. Higher values indicate decreased concordance between the respective experimental setups. CG: Complete Genomics; MOL: Illumina HiSeq; HSX: Illumina HiSeq X; LINE: long interspersed nuclear elements; LTR: long terminal repeats