Table 1.
SMART-PCR and SeqSero results
| Sample ID | Serogroup | SMART PCR code | Serotype by SMART | Antigenic serotype by SeqSero2 | Serotype by SeqSero2 |
|---|---|---|---|---|---|
| S38 | C2-C3 | 1–2–5-6-11 | Dusseldorf | 8:z4,z24:- | Albany or Duesseldorf |
| S39 | B | 1–5–7-9-11-16 | new code | 4:e,h:e,n,x | Chester |
| S40 | E1 | 1–2–5-7-11-13 | new code | 3,10:z29:- | Jedburgh |
| S47 | B | 1–2–5-6-10-11 | new code | 4:g,m,s:- | Hato |
| S52 | B | 1–5–7-9-11-16 | new code | 4:i:1,2 | Typhimurium |
| S53 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S58 | G | 1–5–6-7-11-16 | Telelkebir | 13:d:e,n,z15 | Telelkebir |
| S59 | B | 1–2–5-6-7-8-11-12-13-14-16 | Typhimurium | 4:i:1,2 | Typhimurium |
| S60 | G | 1–5–6-7-9-11-16 | new code | 13:d:e,n,z15 | Telelkebir |
| S61 | D1 | 1–2–3-5-6-11-14-15 | Enteritidis | 9:g,m:- | Enteritidis |
| S62 | D1 | 1–2–3-5-6-11-14-15 | Enteritidis | 9:g,m:- | Enteritidis |
| S63 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S64 | B | 1–2–5-11-13 | Agona | 4:f,g,s:- | Agona |
| S65 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S66 | E4 | 1–2–5-6-11-13-16 | new code | 1,3,19:f,g:1,5 | N/A |
| S67 | B | 1–5–7-9-11-16 | new code | 4:e,h:e,n,x | Chester |
| S68 | B | 1–2–5-6-10-11 | new code | 4:g,m,s:- | Hato |
| S69 | C2-C3 | 1–2–5-10-11-13-16 | new code | 4:i:1,2 | Typhimurium |
| S70 | B | 1–2–5-6-11 | new code | 4:f,g:- | Derby |
| S71 | C1 | 1–5–7-11-13-16 | Virchow | 7:r:1,2 | Virchow |
| S72 | M | 1–2–5-11-13-16 | new code | 28:d:1,5 | Amoutive |
| S74 | C2-C3 | 1–2–5-10-11-13-16 | new code | 8:i:z6 | Kentucky |
| S75 | B | 1–2–5-6-7-8-11-12-13-14-16 | Typhimurium | 4:i:1,2 | Typhimurium |
| S80 | B | 1–2–5-6-10-11 | new code | 4:f,g:- | Derby |
| S82 | B | 1–5–7-9-11-16 | new code | 4:e,h:e,n,x | Chester |
| S83 | B | 1–2–5-6-7-8-11-12-13-14-16 | Typhimurium | 4:i:1,2 | Typhimurium |
| S86 | B | 1–2–5-6-7-10-11-13 | new code | 4:z29:- | Brancaster |
| S90 | I | 1–5–6-10-11-16 | Gaminara | 16:d:1,7 | Gaminara |
| S91 | B | 1–2–5-6-7-10-11-13 | new code | 16:d:1,8 | Gaminara |
| S92 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
| S93 | B | 1–5–6-7-11-16 | Schwarzengrund | 4:d:1,7 | Schwarzengrund |
| S94 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S96 | Poly D | 1–5–6-7-11-13-16 | new code | 4:z29:- | Brancaster |
| S97 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S99 | E1 | 1–2–5-6-7-11-16 | new code | 3,10:e,h:1,6 | Anatum |
| S102 | B | 1–5–6-7-10-11-16 | Bredeney | 4:l,v:1,7 | Bredeney |
| S103 | E4 | 1–5–7-11-16 | Liverpool | 4:f,g:- | Derby |
| S104 | polyE | 1–2–5-6-9-11 | new code | 47:z38:- | Alexanderplatz |
| S105 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
| S106 | C2-C3 | 1–2–5-10-11-16 | new code | 8:i:z6 | Kentucky |
| S107 | B | 1–5–6-7-10-11-16 | Bredeney | 4:l,v:1,7 | Bredeney |
| S108 | C1 | 1–2–5-11-13 | new code | 7:z29:- | Tennessee |
| S109 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
| S110 | D1 | 1–3–5-7-10-11-16 | new code | 9:e,h:1,5 | Eastbourne |
| S111 | C1 | 1–2–5-11-13 | new code | 7:z29:- | Tennessee |
| S112 | B | 1–2–5-6-8-11-13 | new code | 4:g,m,s:- | Hato |
| S114 | B | 1–2–5-6-8-11-13 | new code | 4:g,m,s:- | Hato |
| S115 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S118 | G | 1–6–7-9-11-16 | Poona | 13:z:1,6 | Poona |
| S120 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
| S121 | G | 1–6–7-9-11-16 | Poona | 13:z:1,6 | Poona |
| S123 | B | 1–5–6-7-10-11-16 | Bredeney | 4:l,v:1,7 | Bredeney |
| S124 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S125 | B | 1–2–5-6-8-11-13 | new code | 4:g,m,s:- | Hato |
| S126 | C2-C3 | 1–2–5-10-11-16 | new code | 8:i:z6 | Kentucky |
| S132 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
| S133 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
| S140 | PolyE | 1–2–5-6-9-11 | new code | 47:z38:- | Alexanderplatz |
| S143 | PolyE | 1–2–5-6-9-11 | new code | 47:z38:- | Alexanderplatz |
| S145 | C1 | 1–2–5-11-13 | new code | 7:z29:- | Tennessee |
| S146 | C1 | 1–2–5-6-10-11-13 | Tennessee | 7:z29:- | Tennessee |
| S147 | PolyE | 1–5–6-7-9-11-16 | new code | 47:l,v:e,n,x | Drac |
| S148 | E1 | 1–5–6-7-10-11-16 | new code | 3,10:e,h:1,5 | Muenster |
| S149 | E1 | 1–5–6-7-10-11-16 | new code | 3,10:e,h:1,6 | Muenster |
| S150 | E1 | 1–5–6-7-9-11-16 | Muenster | 3,10:e,h:1,5 | Muenster |
| S151 | E1 | 1–5–6-7-9-11-16 | Muenster | 3,10:e,h:1,6 | Muenster |
| S152 | D1 | 1–5–6-7-9-11-16 | Muenster | 3,10:e,h:1,5 | Muenster |
| S153 | E1 | 1–5–6-7-9-11-16 | Muenster | 3,10:e,h:1,5 | Muenster |
| S154 | E1 | 1–5–6-7-10-11-16 | new code | 3,10:e,h:1,5 | Muenster |
| S155 | G | 1–7–9-10-11-16 | new code | 39:f,g:e,n,z15 | N/A |
| S156 | G | 1–7–9-10-11-16 | new code | 13:z:1,6 | Poona |
| S162 | E4 | 1–5–6-7-11-13 | new code | 1,3,19:b:- | N/A |
| S163 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S164 | E4 | 1–5–6-7-11-13 | new code | 1,3,19:b:- | N/A |
| S165 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S167 | E4 | 1–5–6-7-11-13 | new code | 1,3,19:b:- | N/A |
| S168 | B | 1–2–5-6-7-8-11-12-13-14-16 | Typhimurium | 4:i:1,2 | Typhimurium |
| S169 | B | 1–2–5-6-7-10-11 | new code | 4:g,m,s:- | Hato |
| S170 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S171 | B | 1–2–5-6-10-11-13 | new code | 7:z29:- | Tennessee |
| S172 | C2-C3 | 1–2–5-10-11-13-16 | new code | 8:i:z6 | Kentucky |
| S183 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S184 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S185 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S186 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S187 | B | 1–2–4-5-6-11 | new code | 4:g,m,s:- | Hato |
| S188 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S191 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S194 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S196 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S197 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S198 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S199 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
| S200 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S201 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S202 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S203 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S204 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S207 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S208 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S209 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S212 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S216 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S219 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
| S248 | B | 1–2–5-6-10-11 | new code | 4:f,g:- | Derby |
| S249 | B | 1–2–5-6-10-11 | new code | 4:f,g:- | Derby |
| S251 | B | 1–2–5-6-10-11-13 | new code | 4:f,g:- | Derby |
| S252 | C1 | 1–2–5-11-13 | new code | 7:z29:- | Tennessee |
| S253 | E4 | 1–5–6-7-11-13 | new code | 1,3,19:b:- | N/A |
| S254 | B | 1–2–5-10-11-13-16 | new code | 8:i:z6 | Kentucky |
| S255 | C2-C3 | 1–2–5-10-11-13-16 | new code | 4:i:1,2 | Typhimurium |