Key resources table.
Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
---|---|---|---|---|
Biological sample (Vigna radiata) | V. radiata seeds | Todd’s Tactical Group | TS-229 | Lot SMU2-8HR; DOB 2/25/2019 |
Chemical compound, drug | Digitonin, high purity | EMD Millipore | 300410 | |
Chemical compound, drug | A8-35 | Anatrace | A835 | |
Chemical compound, drug | Gamma-cyclodextrin | EMD Millipore | C4892 | |
Chemical compound, drug | Decylubiquinone | Santa Cruz Biotechnology | sc-358659 | |
Chemical compound, drug | Equine cytochrome c | Sigma Aldrich | C2506 | |
Software, algorithm | Clustal Omega | Madeira et al., 2019 | RRID:SCR_001591 | |
Software, algorithm | Geneious | Kearse et al., 2012 | RRID:SCR_010519 | |
Software, algorithm | SerialEM | University of Colorado, Schorb et al., 2019 | RRID:SCR_017293 | |
Software, algorithm | RELION 3.0 | Zivanov et al., 2018 | RRID:SCR_016274 | |
Software, algorithm | Motioncor2 | Zheng et al., 2017 | ||
Software, algorithm | Ctffind4 | Rohou and Grigorieff, 2015 | RRID:SCR_016732 | |
Software, algorithm | crYOLO | Wagner et al., 2019; Wagner and Raunser, 2020 | RRID:SCR_016732 | |
Software, algorithm | Phyre2 | Kelley et al., 2015 | ||
Software, algorithm | Coot | Emsley and Cowtan, 2004 | RRID:SCR_014222 | |
Software, algorithm | PHENIX | Liebschner et al., 2019; Goddard et al., 2018; Pettersen et al., 2004 | RRID:SCR_014224 | |
Software, algorithm | UCSF Chimera | Resource for Biocomputing, Visualization, and Informatics at the University of California, San Francisco, Pettersen et al., 2004 | RRID:SCR_004097 | |
Software, algorithm | UCSF ChimeraX | Resource for Biocomputing, Visualization, and Informatics at the University of California, San Francisco, Goddard et al., 2018 | RRID:SCR_015872 | |
Software, algorithm | PyMOL Molecular Graphics System | Schrödinger, LLC | RRID:SCR_000305 | Version 2.0 |
Software, algorithm | Scaffold Proteome Software | Proteome Software Inc | RRID:SCR_014345 | Version 4.8.4 |
Software, algorithm | X! Tandem | The GPM | Version Alanine (2017.2.1.4) | |
Other | Holey carbon grids | Quantifoil | Q310CR1.3 | 1.2/1.3 300 mesh |