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. 2021 Jan 19;10:e62047. doi: 10.7554/eLife.62047

Table 1. Cryo-EM data collection, reconstruction, model refinement and validation statistics.

Data Collection and processing
Microscope Titan krios (UCSF)
Camera K3 detector equipped with GIF
Magnification 60,010
Voltage (kV) 300 kV
Electron exposure (e-2) 51
Defocus range (µm) −0.5 to −2.0
Pixel size (Å) 0.8332
Software SerialEM
Reconstruction CIII2 SCIII2+IV CIII2 focused CIV-focused SC Composite
Software cryoSPARC cryoSPARC Relion Relion Phenix
Number of particles 48,111 28,020 38,410 29,348 ---
Box size (pixels) 512 512 512 512 512
Final resolution (Å) 3.2 3.8 3.7 3.8 ---
Map sharpening B factor (Å2) 67 61 83 77 ---
EMDB ID 22445 22449 22450 22447 22448
Model CIII2 CIV SC composite
Software Phenix
Initial model (PDB code) 6Q9E, 6HU9 6HU9, 5B1A 6Q9E, 6HU9, 5B1A
Map/model correlation
Model resolution (Å) 3.3 3.9 3.9
d99 (Å) 3.5 3.9 3.9
FSC model 0.5 (Å) 3.3 3.8 3.8
Map CC (around atoms) 0.88 0.85 0.84
Model composition
Non-hydrogen atoms 32,931 12,772 45,164
Protein residues 3983 1497 5472
Number of chains 20 10 30
Number of ligands and cofactors 8 6 14
Number of lipids 29 20 43
Atomic Displacement Parameters (ADP)
Protein average (Å2) 114.37 38.28 53.17
Ligand average (Å2) 79.11 50.71 66.25
R.m.s. deviations
Bond lengths (Å) 0.005 0.006 0.007
Bond angles (°) 0.704 0.853 1.107
Ramachandran Plot
Favored (%) 93.13 90.75 92.55
Allowed (%) 6.82 9.18 7.40
Disallowed (%) 0.05 0.07 0.06
Validation
MolProbity score 1.97 2.19 2.04
Clash score 10.03 14.21 11.51
Rotamer outliers (%) 0.03 0.08 0.04
EMRinger score 2.80 2.32 2.01
PDB ID 7JRG 7JRO 7JRP