Table 1.
Summary of the final genome assembly of P. notoginseng and comparison with published genomes.
| Items | PN201908CCMU | 2017pub-1 | 2017pub-2 |
|---|---|---|---|
| Total length of contigs (Gb) | 2.66 | 1.85 | 2.39 |
| Contig N50 | 1.12 Mb | 13.16 kb | 16 kb |
| Longest contig (bp) | 13.35 Mb | 120.91 kb | 199.81 kb |
| Scaffold N50 | 216.47 Mb | 157.81 kb | 96 kb |
| Longest scaffold (bp) | 295.55 Mb | 1.19 Mb | 834.33 kb |
| GC content (%) | 34.45 | 34.85 | 28.65 |
| Number of genes | 37 606 | 34 369 | 36 790 |
| Average gene length (bp) | 5059.63 | 2705 | 3307.48 |
| BUSCO (%) | 96.6 | N | 82.4 |
| Average CDS length (bp) | 1202.85 | 957 | 942.43 |
| Average exon length (bp) | 231.00 | 251.39 | 211.92 |
| Average exon number per gene | 5.21 | 3.8 | 4.45 |
| Average intron length (bp) | 917.71 | 622.64 | 686.08 |
| Percentage of repeat sequences (%) | 85.85 | 61.31 | 75.94 |
| Percentage of LTR-RTs (%) | 58.88 | 57.41 | 66.72 |
| Reference | This study | (Zhang et al., 2017a) | (Chen et al., 2017) |