Skip to main content
. 2021 Jan 20;12:484. doi: 10.1038/s41467-020-20783-z

Table 1.

Measured Kd values (in nM) of representative natural and artificial K120R-bound and K120R-unbound REs for WT and K120R-p53.

RE name RE sequence Kd [nM]
WT K120R
200 mM NaCl 275 mM NaCl 200 mM NaCl 275 mM NaCl
p21 GAACATGTCCcAACATGTTg 26 23 35 43
MDM2 AGACAAGTCaGGACTTaaCT 20 97 36 72
APBB2 AGGCATGTCCcAACATGCCC 10 40 37 80
3Q05 pdb GGGCATGTCTGGGCATGTCT 6 33 33 78
BAX GGGCAgGCCCGGGCTTGTCg 22 460 280 N/A
NOXA GAGCgTGTCCGGGCAgGTCg 45 446 68 ∼2900
“Pro-apoptotic” GGGCATGCCCGGGCATGCCC 15 254 23 ∼3500
6FJ5 pdb AGGCATGCCTAGGCATGCCT 8 783 140 800
BAX_8/13 GGGCAgGTCCGGACTTGTCg 8 40 94 168
NOXA_3/13 GAACgTGTCCGGACAgGTCg 23 60 14 181
p21_8/13 GAACATGCCCcAGCATGTTg 33 99 55 479
BAX_8/13 I/C GGGCAgG(I-)CCCGGI(-C)CTTGTCg 9 83 150 N/A
6FJ5_8/18 I/C AGGCATG(I-)CCTAGGCATG(I-)CCT 8 58 72 691

Lower-case letters in RE sequences indicate mismatches from p53 RE consensus. I (inosine) and C (cytosine) in bold indicate I/C bps. Letters in parenthesis indicate a nucleotide of the I-C bp found on the complementary strand. Underlined are core (CWWG) sequences.

N/A not available.