Table 1.
RE name | RE sequence | Kd [nM] | |||
---|---|---|---|---|---|
WT | K120R | ||||
200 mM NaCl | 275 mM NaCl | 200 mM NaCl | 275 mM NaCl | ||
p21 | GAACATGTCCcAACATGTTg | 26 | 23 | 35 | 43 |
MDM2 | AGACAAGTCaGGACTTaaCT | 20 | 97 | 36 | 72 |
APBB2 | AGGCATGTCCcAACATGCCC | 10 | 40 | 37 | 80 |
3Q05 pdb | GGGCATGTCTGGGCATGTCT | 6 | 33 | 33 | 78 |
BAX | GGGCAgGCCCGGGCTTGTCg | 22 | 460 | 280 | N/A |
NOXA | GAGCgTGTCCGGGCAgGTCg | 45 | 446 | 68 | ∼2900 |
“Pro-apoptotic” | GGGCATGCCCGGGCATGCCC | 15 | 254 | 23 | ∼3500 |
6FJ5 pdb | AGGCATGCCTAGGCATGCCT | 8 | 783 | 140 | 800 |
BAX_8/13 | GGGCAgGTCCGGACTTGTCg | 8 | 40 | 94 | 168 |
NOXA_3/13 | GAACgTGTCCGGACAgGTCg | 23 | 60 | 14 | 181 |
p21_8/13 | GAACATGCCCcAGCATGTTg | 33 | 99 | 55 | 479 |
BAX_8/13 I/C | GGGCAgG(I-)CCCGGI(-C)CTTGTCg | 9 | 83 | 150 | N/A |
6FJ5_8/18 I/C | AGGCATG(I-)CCTAGGCATG(I-)CCT | 8 | 58 | 72 | 691 |
Lower-case letters in RE sequences indicate mismatches from p53 RE consensus. I (inosine) and C (cytosine) in bold indicate I/C bps. Letters in parenthesis indicate a nucleotide of the I-C bp found on the complementary strand. Underlined are core (CWWG) sequences.
N/A not available.