Table 2. Indices of codon usage of 51 genes from the cp genome of D. grandiflorum.
Gene | GC | GC3 | GC3S | ENC | Gene | GC | GC3 | GC3S | ENC |
---|---|---|---|---|---|---|---|---|---|
accD | 0.36 | 0.31 | 0.28 | 50.99 | psbA | 0.43 | 0.34 | 0.30 | 40.89 |
atpA | 0.42 | 0.31 | 0.29 | 49.59 | psbB | 0.43 | 0.30 | 0.25 | 47.36 |
atpB | 0.42 | 0.29 | 0.27 | 47.81 | psbC | 0.45 | 0.33 | 0.30 | 46.17 |
atpE | 0.39 | 0.27 | 0.25 | 47.65 | psbD | 0.44 | 0.35 | 0.30 | 46.28 |
atpF | 0.38 | 0.34 | 0.32 | 44.90 | rbcL | 0.44 | 0.31 | 0.29 | 49.45 |
atpI | 0.38 | 0.27 | 0.24 | 46.31 | rpl14 | 0.39 | 0.26 | 0.24 | 49.88 |
ccsA | 0.32 | 0.25 | 0.20 | 46.36 | rpl16 | 0.44 | 0.27 | 0.21 | 41.65 |
cemA | 0.32 | 0.31 | 0.27 | 56.82 | rpl20 | 0.37 | 0.29 | 0.26 | 43.10 |
clpP | 0.45 | 0.34 | 0.31 | 55.82 | rpl22 | 0.36 | 0.30 | 0.24 | 47.84 |
matK | 0.31 | 0.26 | 0.23 | 47.53 | rpoA | 0.36 | 0.29 | 0.26 | 48.30 |
ndhA | 0.36 | 0.25 | 0.22 | 42.71 | rpoB | 0.40 | 0.30 | 0.28 | 50.41 |
ndhB | 0.37 | 0.32 | 0.27 | 47.37 | rpoC1 | 0.38 | 0.28 | 0.25 | 48.97 |
ndhC | 0.36 | 0.26 | 0.20 | 41.24 | rpoC2 | 0.38 | 0.29 | 0.27 | 50.39 |
ndhD | 0.36 | 0.29 | 0.24 | 48.99 | rps11 | 0.45 | 0.26 | 0.22 | 50.83 |
ndhE | 0.34 | 0.23 | 0.20 | 52.21 | rps14 | 0.41 | 0.32 | 0.29 | 40.28 |
ndhF | 0.33 | 0.24 | 0.20 | 44.71 | rps18 | 0.35 | 0.24 | 0.21 | 37.11 |
ndhG | 0.36 | 0.26 | 0.22 | 43.72 | rps2 | 0.38 | 0.26 | 0.23 | 45.79 |
ndhH | 0.39 | 0.30 | 0.25 | 51.44 | rps3 | 0.36 | 0.26 | 0.24 | 48.96 |
ndhI | 0.37 | 0.28 | 0.26 | 50.38 | rps4 | 0.39 | 0.27 | 0.26 | 51.15 |
ndhJ | 0.41 | 0.35 | 0.30 | 57.52 | rps7 | 0.41 | 0.24 | 0.21 | 46.08 |
ndhK | 0.40 | 0.30 | 0.27 | 51.77 | rps8 | 0.37 | 0.25 | 0.22 | 42.77 |
petA | 0.39 | 0.32 | 0.30 | 50.42 | ycf1 | 0.32 | 0.29 | 0.25 | 49.67 |
petB | 0.43 | 0.36 | 0.30 | 45.84 | ycf2 | 0.38 | 0.37 | 0.34 | 53.44 |
petD | 0.38 | 0.24 | 0.21 | 40.60 | ycf3 | 0.40 | 0.49 | 0.46 | 61.00 |
psaA | 0.44 | 0.35 | 0.30 | 50.76 | ycf4 | 0.40 | 0.34 | 0.31 | 51.36 |
psaB | 0.42 | 0.34 | 0.29 | 51.35 | Average | 0.39 | 0.30 | 0.26 | 48.12 |