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. 2021 Jan 14;77:41–64. doi: 10.3897/mycokeys.77.59999

Table 1.

Reference sequences included in molecular phylogenetic analyses of Diaporthe.

Species Isolate Host Location GenBank accession numbers
ITS cal his3 tef1 tub2
D. acericola MFLUCC 17-0956 Acer negundo Italy KY964224 KY964137 NA KY964180 KY964074
D. acerigena CFCC 52554 Acer tataricum China MH121489 MH121413 MH121449 MH121531 NA
D. acutispora CGMCC 3.18285 Coffea sp. China KX986764 KX999274 NA KX999155 KX999195
D. alangii CFCC 52556 Alangium kurzii China MH121491 MH121415 MH121451 MH121533 MH121573
D. alnea CBS 146.46 Alnus sp. Netherlands KC343008 KC343250 KC343492 KC343734 KC343976
D. ampelina STEU2660 Vitis vinifera France AF230751 AY745026 NA AY745056 JX275452
D. amygdali CBS 126679 Prunus dulcis Portugal KC343022 KC343264 KC343506 AY343748 KC343990
D. angelicae CBS 111592 Heracleum sphondylium Austria KC343027 KC343269 KC343511 KC343753 KC343995
D. apiculatum CGMCC 3.17533 Camellia sinensis China KP267896 NA NA KP267970 KP293476
CFCC 53068 Rhus chinensis China MK432651 MK442973 MK442998 MK578127 MK578054
CFCC 53069 Rhus chinensis China MK432652 MK442974 MK442999 MK578128 MK578055
CFCC 53070 Rhus chinensis China MK432653 MK442975 MK443000 MK578129 MK578056
D. arctii CBS 139280 Arctium lappa Austria KJ590736 KJ612133 KJ659218 KJ590776 KJ610891
D. arecae CBS 161.64 Areca catechu India KC343032 KC343274 KC343516 KC343758 KC344000
D. arengae CBS 114979 Arenga enngleri Hong Kong KC343034 KC343276 KC343518 KC343760 KC344002
D. aseana MFLUCC 12-0299a Unknown dead leaf Thailand KT459414 KT459464 NA KT459448 KT459432
D. bauhiniae CFCC 53071 Bauhinia purpurea China MK432648 MK442970 MK442995 MK578124 MK578051
CFCC 53072 China MK432649 MK442971 MK442996 MK578125 MK578052
CFCC 53073 China MK432650 MK442972 MK442997 MK578126 MK578053
D. beilharziae BRIP 54792 Indigofera australis Australia JX862529 NA NA JX862535 KF170921
D. betulicola CFCC 51128 Betula albo-sinensis China KX024653 KX024659 KX024661 KX024655 KX024657
D. biconispora CGMCC 3.17252 Citrus grandis China KJ490597 KJ490539 KJ490539 KJ490476 KJ490418
D. biguttulata CGMCC 3.17248 Citrus limon China KJ490582 NA KJ490524 KJ490461 KJ490403
CFCC 52584 Juglans regia China MH121519 MH121437 MH121477 MH121561 MH121598
D. bohemiae CPC 28222 Vitis vinifera Czech Republic MG281015 MG281710 MG281361 MG281536 MG281188
D. brasiliensis CBS 133183 Aspidosperma tomentosum Brazil KC343042 KC343284 KC343526 KC343768 KC344010
D. caatingaensis CBS 141542 Tacinga inamoena Brazil KY085927 NA NA KY115603 KY115600
D. caryae CFCC 52563 Carya illinoensis China MH121498 MH121422 MH121458 MH121540 MH121580
D. celeris CPC 28262 Vitis vinifera Czech Republic MG281017 MG281712 MG281363 MG281538 MG281190
D. celastrina CBS 139.27 Celastrus sp. USA KC343047 KC343289 KC343531 KC343773 KC344015
D. cercidis CFCC 52565 Cercis chinensis China MH121500 MH121424 MH121460 MH121542 MH121582
D. charlesworthii BRIP 54884m Rapistrum rugostrum Australia KJ197288 NA NA KJ197250 KJ197268
D. cinnamomi CFCC 52569 Cinnamomum sp. China MH121504 NA MH121464 MH121546 MH121586
D. citri AR 3405 Citrus sp. USA KC843311 KC843157 NA KC843071 KC843187
CFCC 53079 Citrus sinensis China MK573940 MK574579 MK574595 MK574615 MK574635
CFCC 53080 Citrus sinensis China MK573941 MK574580 MK574596 MK574616 MK574636
CFCC 53081 Citrus sinensis China MK573942 MK574581 MK574597 MK574617 MK574637
CFCC 53082 Citrus sinensis China MK573943 MK574582 MK574598 MK574618 MK574638
D. citriasiana CGMCC 3.15224 Citrus unshiu China JQ954645 KC357491 KJ490515 JQ954663 KC357459
D. citrichinensis CGMCC 3.15225 Citrus sp. China JQ954648 KC357494 NA JQ954666 NA
D. collariana MFLU 17-2770 Magnolia champaca Thailand MG806115 MG783042 NA MG783040 MG783041
D. conica CFCC 52571 Alangium chinense China MH121506 MH121428 MH121466 MH121548 MH121588
D. cucurbitae CBS 136.25 Arctium sp. Unknown KC343031 KC343273 KC343515 KC343757 KC343999
D. cuppatea CBS 117499 Aspalathus linearis South Africa KC343057 KC343299 KC343541 KC343783 KC344025
D. discoidispora ZJUD89 Citrus unshiu China KJ490624 NA KJ490566 KJ490503 KJ490445
D. endophytica CBS 133811 Schinus terebinthifolius Brazil KC343065 KC343307 KC343549 KC343791 KC343065
D. eres AR5193 Ulmus sp. Germany KJ210529 KJ434999 KJ420850 KJ210550 KJ420799
D. fraxini-angustifoliae BRIP 54781 Fraxinus angustifolia Australia JX862528 NA NA JX862534 KF170920
D. fraxinicola CFCC 52582 Fraxinus chinensis China MH121517 MH121435 NA MH121559 NA
D. fructicola MAFF 246408 Passiflora edulis × P. edulis f. flavicarpa Japan LC342734 LC342738 LC342737 LC342735 LC342736
D. fukushii MAFF 625034 Pyrus pyrifolia Japan JQ807469 NA NA JQ807418 NA
D. fusicola CGMCC 3.17087 Lithocarpus glabra China KF576281 KF576233 NA KF576256 KF576305
D. ganjae CBS 180.91 Cannabis sativa USA KC343112 KC343354 KC343596 KC343838 KC344080
D. ganzhouensis CFCC 53087 Unknown dead wood China MK432665 MK442985 MK443010 MK578139 MK578065
CFCC 53088 Unknown dead wood China MK432666 MK442986 MK443011 MK578140 MK578066
D. garethjonesii MFLUCC 12-0542a Unknown dead leaf Thailand KT459423 KT459470 NA KT459457 KT459441
D. guangxiensis JZB320094 Vitis vinifera China MK335772 MK736727 NA MK523566 MK500168
D. gulyae BRIP 54025 Helianthus annuus Australia JF431299 NA NA KJ197271 JN645803
D. helicis AR5211 Hedera helix France KJ210538 KJ435043 KJ420875 KJ210559 KJ420828
D. heterophyllae CBS 143769 Acacia heterohpylla France MG600222 MG600218 MG600220 MG600224 MG600226
D. hispaniae CPC 30321 Vitis vinifera Spain MG281123 MG281820 MG281471 MG281644 MG281296
D. hubeiensis JZB320123 Vitis vinifera China MK335809 MK500235 NA MK523570 MK500148
D. incompleta CGMCC 3.18288 Camellia sinensis China KX986794 KX999289 KX999265 KX999186 KX999226
D. infecunda CBS 133812 Schinus terebinthifolius Brazil KC343126 KC343368 KC343610 KC343852 KC344094
D. juglandicola CFCC 51134 Juglans mandshurica China KU985101 KX024616 KX024622 KX024628 KX024634
D. kadsurae CFCC 52586 Kadsura longipedunculata China MH121521 MH121439 MH121479 MH121563 MH121600
D. kochmanii BRIP 54033 Helianthus annuus Australia JF431295 NA NA JN645809 NA
D. kongii BRIP 54031 Portulaca grandiflora Australia JF431301 NA NA JN645797 KJ197272
D. litchicola BRIP 54900 Litchi chinensis Australia JX862533 NA NA JX862539 KF170925
D. lithocarpus CGMCC 3.15175 Lithocarpus glabra China KC153104 KF576235 NA KC153095 KF576311
D. lonicerae MFLUCC 17-0963 Lonicera sp. Italy KY964190 KY964116 NA KY964146 KY964073
D. lusitanicae CBS 123212 Foeniculum vulgare Portugal KC343136 KC343378 KC343620 KC343862 KC344104
D. masirevicii BRIP 57892a Helianthus annuus Australia KJ197277 NA NA KJ197239 KJ197257
D. middletonii BRIP 54884e Rapistrum rugostrum Australia KJ197286 NA NA KJ197248 KJ197266
D. miriciae BRIP 54736j Helianthus annuus Australia KJ197282 NA NA KJ197244 KJ197262
D. momicola MFLUCC 16-0113 Prunus persica China KU557563 KU557611 NA KU557631 KU55758
D. multigutullata ZJUD98 Citrus grandis China KJ490633 NA KJ490575 KJ490512 KJ490454
D. multigutullata CFCC 53095 Citrus maxima China MK432645 MK442967 MK442992 MK578121 MK578048
CFCC 53096 Citrus maxima China MK432646 MK442968 MK442993 MK578122 MK578049
CFCC 53097 Citrus maxima China MK432647 MK442969 MK442994 MK578123 MK578050
D. musigena CBS 129519 Musa sp. Australia KC343143 KC343385 KC343627 KC343869 KC344111
D. neilliae CBS 144.27 Spiraea sp. USA KC343144 KC343386 KC343628 KC343870 KC344112
D. neoarctii CBS 109490 Ambrosia trifida USA KC343145 KC343387 KC343629 KC343871 KC344113
D. oraccinii CGMCC 3.17531 Camellia sinensis China KP267863 NA KP293517 KP267937 KP293443
D. ovoicicola CGMCC 3.17093 Citrus sp. China KF576265 KF576223 NA KF576240 KF576289
D. pandanicola MFLU 18-0006 Pandanus sp. Thailand MG646974 NA NA NA MG646930
D. pascoei BRIP 54847 Persea americana Australia JX862532 NA NA JX862538 KF170924
D. passifloricola CBS 141329 Passiflora foetida Malaysia KX228292 NA KX228367 NA KX228387
D. penetriteum CGMCC 3.17532 Camellia sinensis China KP714505 NA KP714493 KP714517 KP714529
D. perjuncta CBS 109745 Ulmus glabra Austria KC343172 KC343414 KC343656 KC343898 KC344140
D. perseae CBS 151.73 Persea gratissima Netherlands KC343173 KC343415 KC343657 KC343899 KC344141
D. pescicola MFLUCC 16-0105 Prunus persica China KU557555 KU557603 NA KU557623 KU557579
D. podocarpi-macrophylli CGMCC 3.18281 Podocarpus macrophyllus China KX986774 KX999278 KX999246 KX999167 KX999207
D. pseudomangiferae CBS 101339 Mangifera indica Dominican Republic KC343181 KC343423 KC343665 KC343907 KC344149
D. pseudophoenicicola CBS 462.69 Phoenix dactylifera Spain KC343184 KC343426 KC343668 KC343910 KC344152
D. psoraleae-pinnatae CBS 136413 Psoralea pinnata South Africa KF777159 NA NA NA KF777252
D. pterocarpicola MFLUCC 10-0580a Pterocarpus indicus Thailand JQ619887 JX197433 NA JX275403 JX275441
D. pulla CBS 338.89 Hedera helix Yugoslavia KC343152 KC343394 KC343636 KC343878 KC344120
D. pyracanthae CAA483 Pyracantha coccinea Portugal KY435635 KY435656 KY435645 KY435625 KY435666
D. racemosae CBS 143770 Euclea racemosa South Africa MG600223 MG600219 MG600221 MG600225 MG600227
D. rostrata CFCC 50062 Juglans mandshurica China KP208847 KP208849 KP208851 KP208853 KP208855
D. sackstonii BRIP 54669b Helianthus annuus Australia KJ197287 NA NA KJ197249 KJ197267
D. sambucusii CFCC 51986 Sambucus williamsii China KY852495 KY852499 KY852503 KY852507 KY852511
D. schimae CFCC 53103 Schima superba China MK432640 MK442962 MK442987 MK578116 MK578043
CFCC 53104 Schima superba China MK432641 MK442963 MK442988 MK578117 MK578044
CFCC 53105 Schima superba China MK432642 MK442964 MK442989 MK578118 MK578045
D. schini CBS 133181 Schinus terebinthifolius Brazil KC343191 KC343433 KC343675 KC343917 KC344159
D. schisandrae CFCC 51988 Schisandra chinensis China KY852497 KY852501 KY852505 KY852509 KY852513
D. schoeni MFLU 15-1279 Schoenus nigricans Italy KY964226 KY964139 NA KY964182 KY964109
D. sennae CFCC 51636 Senna bicapsularis China KY203724 KY228875 NA KY228885 KY228891
D. serafiniae BRIP 55665a Helianthus annuus Australia KJ197274 NA NA KJ197236 KJ197254
D. siamensis MFLUCC 10-573a Dasymaschalon sp. Thailand JQ619879 NA NA JX275393 JX275429
D. sojae FAU635 Glycine max USA KJ590719 KJ612116 KJ659208 KJ590762 KJ610875
D. sterilis CBS 136969 Vaccinium corymbosum Italy KJ160579 KJ160548 MF418350 KJ160611 KJ160528
D. subclavata ICMP20663 Citrus unshiu China KJ490587 NA KJ490529 KJ490466 KJ490408
D. subellipicola MFLU 17-1197 Dead wood China MG746632 NA NA MG746633 MG746634
D. subordinaria CBS 464.90 Plantago lanceolata New Zealand KC343214 KC343456 KC343698 KC343940 KC344182
D. taoicola MFLUCC 16-0117 Prunus persica China KU557567 NA NA KU557635 KU557591
D. tectonae MFLUCC 12-0777 Tectona grandis China KU712430 KU749345 NA KU749359 KU743977
D. tectonendophytica MFLUCC 13-0471 Tectona grandis China KU712439 KU749354 NA KU749367 KU749354
D. tectonigena MFLUCC 12-0767 Tectona grandis China KU712429 KU749358 NA KU749371 KU743976
D. terebinthifolii CBS 133180 Schinus terebinthifolius Brazil KC343216 KC343458 KC343700 KC343942 KC344184
D. ternstroemia CGMCC 3.15183 Ternstroemia gymnanthera China KC153098 NA NA KC153089 NA
D. thunbergii MFLUCC 10-576a Thunbergia laurifolia Thailand JQ619893 JX197440 NA JX275409 JX275449
D. tibetensis CFCC 51999 Juglandis regia China MF279843 MF279888 MF279828 MF279858 MF279873
D. tulliensis BRIP 62248a Theobroma cacao Australia KR936130 NA NA KR936133 KR936132
D. ukurunduensis CFCC 52592 Acer ukurunduense China MH121527 MH121445 MH121485 MH121569 NA
D. unshiuensis CGMCC 3.17569 Citrus unshiu China KJ490587 NA KJ490529 KJ490408 KJ490466
CFCC 52594 Carya illinoensis China MH121529 MH121447 MH121487 MH121571 MH121606
D. undulata CGMCC 3.18293 Leaf of unknown host China-Laos border KX986798 NA KX999269 KX999190 KX999230
D. vawdreyi BRIP 57887a Psidium guajava Australia KR936126 NA NA KR936129 KR936128
D. verniciicola CFCC 53109 Vernicia montana China MK573944 MK574583 MK574599 MK574619 MK574639
CFCC 53110 Vernicia montana China MK573945 MK574584 MK574600 MK574620 MK574640
CFCC 53111 Vernicia montana China MK573946 MK574585 MK574601 MK574621 MK574641
CFCC 53112 Vernicia montana China MK573947 MK574586 MK574602 MK574622 MK574642
D. viniferae JZB320071 Vitis vinifera China MK341551 MK500107 MK500119 MK500112
D. virgiliae CMW40748 Virgilia oroboides South Africa KP247566 NA NA NA KP247575
D. xishuangbanica CGMCC 3.18282 Camellia sinensis China KX986783 NA KX999255 KX999175 KX999216
D. xunwuensis CFCC 53085 Unknown dead wood China MK432663 MK442983 MK443008 MK578137 MK578063
CFCC 53086 Unknown dead wood China MK432664 MK442984 MK443009 MK578138 MK578064
D. yunnanensis CGMCC 3.18289 Coffea sp. China KX986796 KX999290 KX999267 KX999188 KX999228
Diaporthella corylina CBS 121124 Corylus sp. China KC343004 KC343246 KC343488 KC343730 KC343972

Newly sequenced material is indicated in bold type. NA, not applicable.