Table 1.
Species and GenBank accession numbers of DNA sequences used in this study with new sequences in bold.
| Species | Strain/Isolate | Host/Substrate | GenBank accession number | ||||
|---|---|---|---|---|---|---|---|
| ITS | TUB | TEF | CAL | HIS | |||
| Diaporthe alnea | CBS 146.46* | Alnus sp. | KC343008 | KC343976 | KC343734 | KC343250 | KC343492 |
| D. anacardii | CBS 720.97* | Anacardium occidentale | KC343024 | KC343992 | KC343750 | KC343266 | KC343508 |
| D. baccae | CBS 136972* | Vaccinium corymbosum | KJ160565 | – | KJ160597 | – | – |
| D. batatas | CBS 122.21 | Ipomoea batatas | KC343040 | KC344008 | KC343766 | KC343282 | KC343524 |
| D. camelliae-sinensis | SAUCC194.92* | Camellia sinensis | MT822620 | MT855817 | MT855932 | MT855699 | MT855588 |
| SAUCC194.103 | Castanea mollissima | MT822631 | MT855828 | MT855943 | MT855710 | MT855599 | |
| SAUCC194.104 | Castanea mollissima | MT822632 | MT855829 | MT855944 | MT855711 | MT855600 | |
| SAUCC194.108 | Machilus pingii | MT822636 | MT855833 | MT855948 | MT855715 | MT855603 | |
| D. canthii | CBS 132533* | Canthium inerme | JX069864 | KC843230 | KC843120 | KC843174 | – |
| D. chamaeropis | CBS 753.70 | Spartium junceum | KC343049 | KC344017 | KC343775 | KC343291 | KC343533 |
| D. cinerascens | CBS 719.96 | Ficus carica | KC343050 | KC344018 | KC343776 | KC343292 | KC343534 |
| D. cissampeli | CPC 27302 | Cissampelos capensis | KX228273 | KX228384 | – | – | KX228366 |
| D. citri | CBS 230.52 | Citrus sinensis | KC343052 | KC344020 | KC343778 | KC343294 | KC343536 |
| D. collariana | MFLUCC 17-2636* | Magnolia champaca | MG806115 | MG783041 | MG783040 | MG783042 | – |
| D. convolvuli | CBS 124654 | Convolvulus arvensis | KC343054 | KC344022 | KC343780 | KC343296 | KC343538 |
| D. cytosporella | AR 5149 | Citrus sinensis | KC843309 | KC843223 | KC843118 | KC843143 | – |
| D. destruens | SPPD-1 | Solanum tuberosum | JN848791 | JX421691 | – | – | – |
| D. dorycnii | MFLU 17-1015* | Dorycnium hirsutum | KY964215 | KY964099 | KY964171 | – | – |
| D. elaeagni | CBS 504.72 | Elaeagnus sp. | KC343064 | KC344032 | KC343790 | KC343306 | KC343548 |
| D. elaeagni-glabrae | LC4802* | Elaeagnus glabra | KX986779 | KX999212 | KX999171 | KX999281 | KX999251 |
| D. endophytica | CBS 133811* | Schinus terebinthifolius | KC343065 | KC344033 | KC343791 | KC343307 | KC343549 |
| D. eres | AR5193* | Ulmus laevis | KJ210529 | KJ420799 | KJ210550 | KJ434999 | KJ420850 |
| D. foeniculina | CBS 123208 | Foeniculum vulgare | KC343104 | KC344072 | KC343830 | KC343346 | KC343588 |
| D. fructicola | MAFF 246408 | Passiflora edulis | LC342734 | LC342736 | LC342735 | LC342738 | LC342737 |
| D. grandiflori | SAUCC194.84* | Heterostemma grandiflorum | MT822612 | MT855809 | MT855924 | MT855691 | MT855580 |
| D. heliconiae | SAUCC194.75 | Heliconia metallica | MT822603 | MT855800 | MT855915 | MT855682 | MT855571 |
| SAUCC194.77* | Heliconia metallica | MT822605 | MT855802 | MT855917 | MT855684 | MT855573 | |
| D. heterophyllae | CPC 26215 | Acacia heterophylla | MG600222 | MG600226 | MG600224 | MG600218 | MG600220 |
| D. heterostemmatis | SAUCC194.85* | Heterostemma grandiflorum | MT822613 | MT855810 | MT855925 | MT855692 | MT855581 |
| SAUCC194.102 | Camellia sinensis | MT822630 | MT855827 | MT855942 | MT855709 | MT855598 | |
| D. hickoriae | CBS 145.26* | Carya glabra | KC343118 | KC344086 | KC343844 | KC343360 | KC343602 |
| D. inconspicua | CBS 133813* | Maytenus ilicifolia | KC343123 | KC344091 | KC343849 | KC343365 | KC343607 |
| D. kongii | T12509H* | Helianthus annuus | JF431301 | KJ197272 | JN645797 | – | – |
| D. litchii | SAUCC194.12 | Elaeagnus conferta | MT822540 | MT855737 | MT855854 | MT855625 | MT855509 |
| SAUCC194.22* | Litchi chinensis | MT822550 | MT855747 | MT855863 | MT855635 | MT855519 | |
| D. longicolla | FAU599 | Glycine max | KJ590728 | KJ610883 | KJ590767 | KJ612124 | KJ659188 |
| D. lutescens | SAUCC194.36* | Chrysalidocarpus lutescens | MT822564 | MT855761 | MT855877 | MT855647 | MT855533 |
| D. macintoshii | BRIP 55064a* | Rapistrum rugostrum | KJ197289 | KJ197269 | KJ197251 | – | – |
| D. masirevicii | BRIP 57330 | Chrysanthemoides monilifera subsp. rotundata | KJ197275 | KJ197255 | KJ197237 | – | – |
| BRIP 57892a* | Helianthus annuus | KJ197276 | KJ197257 | KJ197239 | – | – | |
| D. melastomatis | SAUCC194.55* | Melastoma malabathricum | MT822583 | MT855780 | MT855896 | MT855664 | MT855551 |
| SAUCC194.80 | Millettia reticulata | MT822608 | MT855805 | MT855920 | MT855687 | MT855576 | |
| SAUCC194.88 | Camellia sinensis | MT822616 | MT855813 | MT855928 | MT855695 | MT855584 | |
| D. melonis | CBS 507.78* | Cucumis melo | KC343142 | KC344110 | KC343868 | KC343384 | KC343626 |
| D. miriciae | BRIP 54736j* | Helianthus annuus | KJ197282 | KJ197262 | KJ197244 | – | – |
| D. neilliae | CBS 144.27 | Spiraea sp. | KC343144 | KC344112 | KC343870 | KC343386 | KC343628 |
| D. nigra | JZBH320170 | Ballota nigra | MN653009 | MN887113 | MN892277 | – | – |
| D. nomurai | CBS 157.29 | Morus sp. | KC343154 | KC344122 | KC343880 | KC343396 | KC343638 |
| D. oncostoma | CBS 100454 | Robinia pseudoacacia | KC343160 | KC344128 | KC343886 | KC343402 | KC343644 |
| CBS 109741 | Robinia pseudoacacia | KC343161 | KC344129 | KC343887 | KC343403 | KC343645 | |
| D. ovalispora | ZJUD93* | Citrus limon | KJ490628 | KJ490449 | KJ490507 | – | KJ490570 |
| D. parapterocarpi | CPC 22729 | Pterocarpus brenanii | KJ869138 | KJ869248 | – | – | – |
| D. parvae | PSCG 034* | Pyrus bretschneideri | MK626919 | MK691248 | MK654858 | – | MK726210 |
| D. passifloricola | CPC 27480* | Passiflora foetida | KX228292 | KX228387 | – | – | KX228367 |
| D. penetriteum | LC3353* | Camellia sinensis | KP714505 | KP714529 | KP714517 | – | KP714493 |
| LC3394 | Camellia sinensis | KP267893 | KP293473 | KP267967 | – | KP293544 | |
| D. phaseolorum | CBS 116019 | Caperonia palustris | KC343175 | KC344143 | KC343901 | KC343417 | KC343659 |
| CBS 116020 | Aster exilis | KC343176 | KC344144 | KC343902 | KC343418 | KC343660 | |
| D. phillipsii | CAA 817* | Dead twig | MK792305 | MN000351 | MK828076 | MK883831 | MK871445 |
| D. poincianellae | URM 7932 | Poincianella pyramidalis | MH989509 | MH989537 | MH989538 | MH989540 | MH989539 |
| D. pseudoinconspicua | G26 | Poincianella pyramidalis | MH122538 | MH122524 | MH122533 | MH122528 | MH122517 |
| D. psoraleae | CPC 21634 | Psoralea pinnata | KF777158 | KF777251 | KF777245 | – | – |
| D. pterocarpi | MFLUCC 10-0571 | Pterocarous indicus | JQ619899 | JX275460 | JX275416 | JX197451 | – |
| MFLUCC 10-0575 | Pterocarous indicus | JQ619901 | JX275462 | JX275418 | JX197453 | – | |
| D. pungensis | SAUCC194.89 | Camellia sinensis | MT822617 | MT855814 | MT855929 | MT855696 | MT855585 |
| SAUCC194.112* | Elaeagnus pungens | MT822640 | MT855837 | MT855952 | MT855719 | MT855607 | |
| D. ravennica | MFLUCC 17-1029 | Tamarix sp. | KY964191 | KY964075 | KY964147 | – | – |
| D. rosae | MFLUCC 17-2658 | Rosa sp. | MG828894 | MG843878 | – | MG829273 | – |
| D. rumicicola | MFLUCC18-0739 | Rumex sp. | MH846233 | MK049555 | MK049554 | – | – |
| D. saccarata | CBS 116311* | Protea repens | KC343190 | KC344158 | KC343916 | KC343432 | KC343674 |
| D. shennongjiaensis | CNUCC 201905 | Juglans regia | MN216229 | MN227012 | MN224672 | MN224551 | MN224560 |
| D. sojae | CBS 100.87* | Glycine soja | KC343196 | KC344164 | KC343922 | KC343438 | KC343680 |
| D. stictica | CBS 370.54 | Buxus sampervirens | KC343212 | KC344180 | KC343938 | KC343454 | KC343696 |
| D. subclavata | ZJUD95* | Citrus unshiu | KJ490630 | KJ490451 | KJ490509 | – | KJ490572 |
| SAUCC194.66 | Pometia pinnata | MT822594 | MT855791 | MT855906 | MT855674 | MT855562 | |
| D. subellipicola | KUMCC 17-0153 | on dead wood | MG746632 | MG746634 | MG746633 | – | – |
| D. tectonendophytica | MFLUCC 13-0471* | Tectona grandis | KU712439 | KU743986 | KU749367 | KU749354 | – |
| SAUCC194.11 | Elaeagnus conferta | MT822539 | MT855736 | MT855853 | MT855624 | MT855508 | |
| SAUCC194.63 | Pometia pinnata | MT822591 | MT855788 | MT855903 | MT855672 | MT855559 | |
| D. ueckerae | FAU656* | Cucumis melo | KJ590726 | KJ610881 | KJ590747 | KJ612122 | KJ659215 |
| D. unshiuensis | CFCC 52595 | Carya illinoensis | MH121530 | MH121607 | MH121572 | MH121448 | MH121488 |
| D. vangueriae | CPC 22703 | Vangueria infausta | KJ869137 | KJ869247 | – | – | – |
| D. velutina | LC4419* | Neolitsea sp. | KX986789 | KX999222 | KX999181 | KX999286 | KX999260 |
| D. virgiliae | CMW40755* | Virgilia oroboides | KP247573 | KP247582 | – | – | – |
| CMW40748 | Virgilia oroboides | KP247566 | KP247575 | – | – | – | |
| D. zaobaisu | PSCG 031* | Pyrus bretschneideri | MK626922 | MK691245 | MK654855 | – | MK726207 |
| Diaporthella corylina | CBS 121124 | Corylus sp. | KC343004 | KC343972 | KC343730 | KC343246 | KC343488 |
Isolates marked with “*” are ex-type or ex-epitype strains.