Table 3.
Assignment of genetic profiles according to the different typing schemes for strains initially belonging to the lineage A.
| Strain ID | Isolation Source | Year of isolation | ST – gyrA – porA – Extended MLST | CT – cgMLST SeqSphere+ | Genotype – cgMLST Oxford | L1:L2:L3 – cgMLST INNUENDO | Genotype – wgMLST INNUENDO |
|---|---|---|---|---|---|---|---|
| Camp001 | MA | 2005 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp005 | H | 2006 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp003 | H | 2006 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp004 | MA | 2006 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp006 | H | 2007 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp002 | MA | 2006 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp009 | H | 2011 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp010 | MA | 2011 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp008 | SW | 2011 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp014 | H | 2012 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp012 | MA | 2012 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp011 | SW | 2012 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp015 | MA | 2012 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp016 | V | 2013 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp018 | H | 2013 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp017 | H | 2013 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp021 | MA | 2014 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp019 | H | 2014 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp020 | MA | 2014 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp023 | MA | 2015 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp029 | MA | 2016 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp028 | H | 2016 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp027 | H | 2016 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp032 | V | 2016 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp031 | H | 2016 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp035 | H | 2017 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp036 | MA | 2018 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp037 | MA | 2018 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp024 | MA | 2015 | 19 – 8 – 582 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp025 | H | 2015 | 19 – 8 – 2068 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp022 | H | 2015 | 19 – 8 – 2070 | 82 | Ox1 | 1:9:1 | wg1 |
| Camp013 | H | 2012 | 19 – 8 – 7 | 82 | Ox1 | 2695:9:1 | wg1 |
| Camp030 | V | 2016 | 19 – 8 – 7 | 82 | Ox1 | 1:9:1 | wg5 |
| Camp034 | H | 2017 | 19 – 1 – 7 | 82 | Ox11 | 1:9:1 | wg6 |
In the column Isolation Source, H refers to clinical samples, MA to mammals (cattle and sheep), V to poultry, and SW to surface waters.
ST, Sequence Type; CT, Complex Type; MLST, Multi Locus Sequence Typing; cg, core genome; wg, whole genome.